Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2JAW

Crystal structure of D41N variant of human mitochondrial 5'(3')- deoxyribonucleotidase (mdN) in complex with 5-bromovinyldeoxyuridine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0008253molecular_function5'-nucleotidase activity
A0009264biological_processdeoxyribonucleotide catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE BVP A1228
ChainResidue
AASN41
ASER131
APRO132
AILE133
ALYS143
ALYS165
AMG1230
AHOH2167
AHOH2168
AHOH2169
AHOH2170
AMET42
AHOH2171
AHOH2172
AASP43
APHE49
ATRP76
AVAL77
ASER78
ATRP96
ATHR130

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A1229
ChainResidue
AALA119
ALEU121
ATHR124
AHOH2075
AHOH2078
AHOH2079

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A1230
ChainResidue
AASN41
AASP43
AASP176
ABVP1228
AHOH2167
AHOH2168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile
ChainResidueDetails
AASN41

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000305
ChainResidueDetails
AASP43

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:12352955
ChainResidueDetails
AASN41
AASP176

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING:
ChainResidueDetails
AASP43
APHE49
APHE75
ATRP76
AVAL77
ATRP96
ATHR130
ALYS165

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1q91
ChainResidueDetails
AASP43
AASN41

site_idMCSA1
Number of Residues3
DetailsM-CSA 812
ChainResidueDetails
AASN41covalently attached, metal ligand, nucleofuge, nucleophile
AASP43metal ligand
AASP176metal ligand

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon