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2JAO

Crystal structure of D12N variant of mouse cytosolic 5'(3')- deoxyribonucleotidase (cdN) in complex with deoxyguanosine 5'- monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000255biological_processallantoin metabolic process
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005829cellular_componentcytosol
A0006204biological_processIMP catabolic process
A0006249biological_processdCMP catabolic process
A0008252molecular_functionnucleotidase activity
A0008253molecular_function5'-nucleotidase activity
A0009117biological_processnucleotide metabolic process
A0009223biological_processpyrimidine deoxyribonucleotide catabolic process
A0009264biological_processdeoxyribonucleotide catabolic process
A0016311biological_processdephosphorylation
A0016787molecular_functionhydrolase activity
A0016791molecular_functionphosphatase activity
A0019103molecular_functionpyrimidine nucleotide binding
A0042802molecular_functionidentical protein binding
A0043605biological_processamide catabolic process
A0046050biological_processUMP catabolic process
A0046055biological_processdGMP catabolic process
A0046074biological_processdTMP catabolic process
A0046079biological_processdUMP catabolic process
A0046872molecular_functionmetal ion binding
A0050483molecular_functionIMP 5'-nucleotidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1200
ChainResidue
AARG5
ALYS196
AARG197
ASER199

site_idAC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE DGP A 1201
ChainResidue
AALA48
AASN49
ATYR67
ATHR101
ATHR102
APRO103
ALEU104
ALYS114
ALYS136
AMG1202
AHOH2171
AHOH2172
AHOH2173
AHOH2174
AHOH2175
AASN12
AMET13
AASP14
APHE20
ALEU47

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1202
ChainResidue
AASN12
AASP14
AASP147
ADGP1201
AHOH2174
AHOH2175

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000305
ChainResidueDetails
AASN12

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000305
ChainResidueDetails
AASP14

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING:
ChainResidueDetails
AASN12
AASP14
APHE20
APHE46
ATYR67
ATHR101
ALYS136
AASP147

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:21183079
ChainResidueDetails
ATHR102

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:21183079
ChainResidueDetails
ASER184

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1q91
ChainResidueDetails
AASP14
AASN12

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PDB entries from 2024-09-11

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