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2IZ1

6PDH complexed with PEX inhibitor synchrotron data

Functional Information from GO Data
ChainGOidnamespacecontents
A0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
A0006098biological_processpentose-phosphate shunt
A0016491molecular_functionoxidoreductase activity
A0019521biological_processD-gluconate metabolic process
A0050661molecular_functionNADP binding
B0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
B0006098biological_processpentose-phosphate shunt
B0016491molecular_functionoxidoreductase activity
B0019521biological_processD-gluconate metabolic process
B0050661molecular_functionNADP binding
C0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
C0006098biological_processpentose-phosphate shunt
C0016491molecular_functionoxidoreductase activity
C0019521biological_processD-gluconate metabolic process
C0050661molecular_functionNADP binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B1471
ChainResidue
BSER128
BGLY129
BHIS187
BCYS366
BILE367
BHOH2337

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B1472
ChainResidue
BASN177
BHOH2126
BHOH2333
BASN112
BGLY144
BGLN145

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL C1471
ChainResidue
CSER128
CGLY129
CILE367
CPHE450

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL C1472
ChainResidue
CASN112
CGLY144
CGLN145
CASN177
CHOH2108
CHOH2307

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATR A1470
ChainResidue
AALA12
AASN33
AARG34
ATHR35
AVAL74
AGLN75
AALA79
ALYS262
AHOH2556
AHOH2557
AHOH2558
AHOH2559
AHOH2560

site_idAC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE RES A1471
ChainResidue
AASN102
ALYS184
AASN188
AGLU191
ATYR192
ALYS262
AARG289
AILE367
AHOH2189
AHOH2562
AHOH2563
AHOH2564
AHOH2565
AHOH2566
BARG447
BPHE450
BHIS453

site_idAC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE P33 A1472
ChainResidue
AGLN165
AASP229
AGLU371
APEG1473
AHOH2567
AHOH2568
AHOH2569
AHOH2570
AHOH2572
CGLN47
CP331473
CHOH2668
CHOH2670

site_idAC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ATR B1470
ChainResidue
BALA12
BASN33
BARG34
BTHR35
BLYS38
BVAL74
BGLN75
BALA79
BTHR83
BHOH2083
BHOH2084
BHOH2650
BHOH2651
BHOH2652
BHOH2653
BHOH2655

site_idAC9
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ATR C1470
ChainResidue
CALA12
CASN33
CARG34
CTHR35
CLYS38
CVAL74
CGLN75
CALA79
CTHR83
CHOH2077
CHOH2147
CHOH2658
CHOH2660
CHOH2661
CHOH2663

site_idBC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE P33 C1473
ChainResidue
CGLN47
CLYS49
CLEU51
CHOH2106
CHOH2665
CHOH2667
CHOH2668
CHOH2669
CHOH2670
APRO164
AP331472
CPHE43

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG A1473
ChainResidue
AP331472
AHOH2572
AHOH2573
CHOH2669

Functional Information from PROSITE/UniProt
site_idPS00461
Number of Residues13
Details6PGD 6-phosphogluconate dehydrogenase signature. IlDkaGNKGTGkW
ChainResidueDetails
AILE255-TRP267

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:17222187
ChainResidueDetails
ALYS184
BLYS184
CLYS184

site_idSWS_FT_FI2
Number of Residues3
DetailsACT_SITE: Proton donor => ECO:0000269|PubMed:17222187
ChainResidueDetails
AGLU191
BGLU191
CGLU191

site_idSWS_FT_FI3
Number of Residues15
DetailsBINDING: BINDING => ECO:0000269|PubMed:17222187
ChainResidueDetails
AGLY10
BHIS453
CGLY10
CASN33
CVAL74
CARG447
CHIS453
AASN33
AVAL74
AARG447
AHIS453
BGLY10
BASN33
BVAL74
BARG447

site_idSWS_FT_FI4
Number of Residues18
DetailsBINDING: in other chain => ECO:0000269|PubMed:17222187
ChainResidueDetails
AASN102
BTYR192
BLYS262
BARG289
CASN102
CSER128
CHIS187
CTYR192
CLYS262
CARG289
ASER128
AHIS187
ATYR192
ALYS262
AARG289
BASN102
BSER128
BHIS187

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 2pgd
ChainResidueDetails
AGLY130
AGLU191
ALYS184
AASN188

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 2pgd
ChainResidueDetails
BGLY130
BGLU191
BLYS184
BASN188

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 2pgd
ChainResidueDetails
CGLY130
CGLU191
CLYS184
CASN188

237992

PDB entries from 2025-06-25

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