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2IXC

RmlC M. tuberculosis with dTDP-rhamnose

Functional Information from GO Data
ChainGOidnamespacecontents
A0000271biological_processpolysaccharide biosynthetic process
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0008830molecular_functiondTDP-4-dehydrorhamnose 3,5-epimerase activity
A0016853molecular_functionisomerase activity
A0019305biological_processdTDP-rhamnose biosynthetic process
B0000271biological_processpolysaccharide biosynthetic process
B0005515molecular_functionprotein binding
B0005829cellular_componentcytosol
B0008830molecular_functiondTDP-4-dehydrorhamnose 3,5-epimerase activity
B0016853molecular_functionisomerase activity
B0019305biological_processdTDP-rhamnose biosynthetic process
C0000271biological_processpolysaccharide biosynthetic process
C0005515molecular_functionprotein binding
C0005829cellular_componentcytosol
C0008830molecular_functiondTDP-4-dehydrorhamnose 3,5-epimerase activity
C0016853molecular_functionisomerase activity
C0019305biological_processdTDP-rhamnose biosynthetic process
D0000271biological_processpolysaccharide biosynthetic process
D0005515molecular_functionprotein binding
D0005829cellular_componentcytosol
D0008830molecular_functiondTDP-4-dehydrorhamnose 3,5-epimerase activity
D0016853molecular_functionisomerase activity
D0019305biological_processdTDP-rhamnose biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE TRH A1199
ChainResidue
AGLN47
AHOH2218
AHOH2251
AHOH2252
AHOH2253
AHOH2254
AHOH2255
AHOH2256
AHOH2257
BHIS19
BARG23
AASN49
BPHE26
BGLU28
CGLU90
CARG181
AARG59
AHIS62
ALYS72
AHIS119
ATYR132
ATYR138
AARG170

site_idAC2
Number of Residues28
DetailsBINDING SITE FOR RESIDUE TRH B1199
ChainResidue
APHE26
AGLU28
BGLN47
BASN49
BARG59
BHIS62
BLYS72
BHIS119
BTYR132
BTYR138
BGLU143
BARG170
BASP171
BHOH2068
BHOH2220
BHOH2294
BHOH2295
BHOH2296
BHOH2297
BHOH2298
BHOH2299
BHOH2300
BHOH2301
BHOH2302
BHOH2303
BHOH2304
DGLU90
DARG181

site_idAC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE TRH C1199
ChainResidue
AGLU90
AARG181
CGLN47
CASN49
CARG59
CHIS62
CLYS72
CHIS119
CTYR132
CTYR138
CARG170
CHOH2213
CHOH2317
CHOH2318
CHOH2319
CHOH2320
CHOH2321
CHOH2322
CHOH2323
CHOH2324
CHOH2326
CHOH2327
DPHE26
DGLU28

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE TRH D1199
ChainResidue
DHOH2274
BGLU90
BARG181
CHIS19
CARG23
CPHE26
CGLU28
DGLN47
DASN49
DARG59
DHIS62
DLYS72
DHIS119
DTYR132
DTYR138
DARG170
DHOH2265
DHOH2266
DHOH2267
DHOH2268
DHOH2269
DHOH2270
DHOH2271
DHOH2272
DHOH2273

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PubMed","id":"17046787","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2IXC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"Q9HU21","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17046787","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2IXC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17046787","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2IXC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17046787","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12951098","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PM7","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17046787","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12951098","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PM7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2IXC","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q9HU21","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues4
DetailsSite: {"description":"Participates in a stacking interaction with the thymidine ring of dTDP-4-oxo-6-deoxyglucose","evidences":[{"source":"UniProtKB","id":"Q5SFD1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dzr
ChainResidueDetails
AHIS62
AASP171

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dzr
ChainResidueDetails
BHIS62
BASP171

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dzr
ChainResidueDetails
CHIS62
CASP171

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dzr
ChainResidueDetails
DHIS62
DASP171

239803

PDB entries from 2025-08-06

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