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2IVD

Structure of protoporphyrinogen oxidase from Myxococcus xanthus with acifluorfen

Functional Information from GO Data
ChainGOidnamespacecontents
A0004729molecular_functionoxygen-dependent protoporphyrinogen oxidase activity
A0005737cellular_componentcytoplasm
A0005886cellular_componentplasma membrane
A0006779biological_processporphyrin-containing compound biosynthetic process
A0006782biological_processprotoporphyrinogen IX biosynthetic process
A0006783biological_processheme biosynthetic process
A0016491molecular_functionoxidoreductase activity
B0004729molecular_functionoxygen-dependent protoporphyrinogen oxidase activity
B0005737cellular_componentcytoplasm
B0005886cellular_componentplasma membrane
B0006779biological_processporphyrin-containing compound biosynthetic process
B0006782biological_processprotoporphyrinogen IX biosynthetic process
B0006783biological_processheme biosynthetic process
B0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ACJ A1465
ChainResidue
AARG95
APHE331
ALEU332
AMET365
AILE412
AFAD1466
AHOH2068
ATHR166
AGLY167
AILE168
ATYR169
AALA170
AILE311
APHE329
AGLY330

site_idAC2
Number of Residues34
DetailsBINDING SITE FOR RESIDUE FAD A1466
ChainResidue
AGLY16
AGLY18
AILE19
ASER20
ALEU38
AGLU39
ASER40
ASER41
AGLY46
AALA47
AGLY61
APRO62
AASN63
ASER64
AALA249
AARG250
AVAL251
AALA282
AALA283
AALA287
AILE412
AGLY440
AASN441
AVAL446
AGLY447
ALEU448
AACJ1465
AHOH2008
AHOH2016
AHOH2141
AHOH2142
AHOH2143
AHOH2144
AHOH2145

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ACJ B1468
ChainResidue
BARG95
BTHR166
BGLY167
BILE168
BTYR169
BALA170
BILE311
BPHE329
BGLY330
BPHE331
BLEU332
BALA344
BILE345
BMET365
BILE412
BFAD1469
BHOH2132

site_idAC4
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD B1469
ChainResidue
BVAL15
BGLY16
BGLY18
BILE19
BSER20
BLEU38
BGLU39
BSER40
BGLY46
BALA47
BGLY61
BPRO62
BASN63
BSER64
BVAL251
BALA283
BPRO284
BALA287
BVAL313
BGLY440
BASN441
BVAL446
BGLY447
BLEU448
BACJ1468
BHOH2001
BHOH2129
BHOH2133
BHOH2134
BHOH2136
BHOH2137

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE TWN B1472
ChainResidue
BGLY129
BARG134
BGOL1467
BHOH2131
BHOH2142
BLEU125
BARG126

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A1467
ChainResidue
APRO120
ALEU121
AGLY122
AALA123
AARG201
AHOH2146

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A1468
ChainResidue
AGLY122
AALA123
AARG155
AHIS192
AARG193
ALEU197
AARG201
AHOH2063

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B1467
ChainResidue
BARG126
BARG193
BTWN1472
BHOH2045
BHOH2131

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B1470
ChainResidue
BPRO120
BLEU121
BGLY122
BALA123
BARG201
BHOH2138

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B1471
ChainResidue
BGLY122
BALA123
BARG193
BLEU197
BARG201
BHOH2072
BHOH2140
BHOH2141

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:17046834
ChainResidueDetails
AGLY16
BGLY61
BVAL251
BVAL446
AGLU39
AALA47
AGLY61
AVAL251
AVAL446
BGLY16
BGLU39
BALA47

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATRP408
BTRP408

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1b5q
ChainResidueDetails
ALEU66

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1b5q
ChainResidueDetails
BLEU66

222415

PDB entries from 2024-07-10

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