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2IMW

Mechanism of Template-Independent Nucleotide Incorporation Catalyzed by a Template-Dependent DNA Polymerase

Functional Information from GO Data
ChainGOidnamespacecontents
P0000287molecular_functionmagnesium ion binding
P0003677molecular_functionDNA binding
P0003684molecular_functiondamaged DNA binding
P0003887molecular_functionDNA-directed DNA polymerase activity
P0005737cellular_componentcytoplasm
P0006260biological_processDNA replication
P0006261biological_processDNA-templated DNA replication
P0006281biological_processDNA repair
P0006974biological_processDNA damage response
P0042276biological_processerror-prone translesion synthesis
P0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA P 406
ChainResidue
PASP7
PPHE8
PASP105
PDDS401
PHOH660

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA P 407
ChainResidue
THOH50
THOH193
PALA181
PILE186
PHOH663
PHOH669

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE DDS P 401
ChainResidue
PASP7
PPHE8
PASP9
PTYR10
PPHE11
PALA44
PTHR45
PTYR48
PARG51
PASP105
PLYS159
PCA406
PHOH508
PHOH509
PHOH513
PHOH613
PHOH660
PHOH665
PHOH670
PHOH672
SDG1801
TDC1918

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO P 501
ChainResidue
PGLU100
PLYS148
PARG240
SHOH206

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO P 502
ChainResidue
PLYS78
PARG247
SDG1802

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO P 503
ChainResidue
PALA220
PTYR224

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO P 504
ChainResidue
PHIS285
PVAL287
PSER297
PARG336
PLYS348

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO P 505
ChainResidue
PTYR122

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO P 506
ChainResidue
PVAL249
PARG267
PGLU271

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
PGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
PASP7
PASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
PTYR12

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PDB entries from 2024-07-24

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