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2IFQ

Crystal structure of S-nitroso thioredoxin

Functional Information from GO Data
ChainGOidnamespacecontents
A0000122biological_processnegative regulation of transcription by RNA polymerase II
A0003723molecular_functionRNA binding
A0004791molecular_functionthioredoxin-disulfide reductase (NADPH) activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0009314biological_processresponse to radiation
A0015035molecular_functionprotein-disulfide reductase activity
A0019725biological_processcellular homeostasis
A0042803molecular_functionprotein homodimerization activity
A0043388biological_processpositive regulation of DNA binding
A0045454biological_processcell redox homeostasis
A0046826biological_processnegative regulation of protein export from nucleus
A0047134molecular_functionprotein-disulfide reductase [NAD(P)H] activity
A0051897biological_processpositive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
A0055114biological_processobsolete oxidation-reduction process
A0061692biological_processcellular detoxification of hydrogen peroxide
A0070062cellular_componentextracellular exosome
A0071731biological_processresponse to nitric oxide
B0000122biological_processnegative regulation of transcription by RNA polymerase II
B0003723molecular_functionRNA binding
B0004791molecular_functionthioredoxin-disulfide reductase (NADPH) activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0009314biological_processresponse to radiation
B0015035molecular_functionprotein-disulfide reductase activity
B0019725biological_processcellular homeostasis
B0042803molecular_functionprotein homodimerization activity
B0043388biological_processpositive regulation of DNA binding
B0045454biological_processcell redox homeostasis
B0046826biological_processnegative regulation of protein export from nucleus
B0047134molecular_functionprotein-disulfide reductase [NAD(P)H] activity
B0051897biological_processpositive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
B0055114biological_processobsolete oxidation-reduction process
B0061692biological_processcellular detoxification of hydrogen peroxide
B0070062cellular_componentextracellular exosome
B0071731biological_processresponse to nitric oxide
C0000122biological_processnegative regulation of transcription by RNA polymerase II
C0003723molecular_functionRNA binding
C0004791molecular_functionthioredoxin-disulfide reductase (NADPH) activity
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0005634cellular_componentnucleus
C0005654cellular_componentnucleoplasm
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0009314biological_processresponse to radiation
C0015035molecular_functionprotein-disulfide reductase activity
C0019725biological_processcellular homeostasis
C0042803molecular_functionprotein homodimerization activity
C0043388biological_processpositive regulation of DNA binding
C0045454biological_processcell redox homeostasis
C0046826biological_processnegative regulation of protein export from nucleus
C0047134molecular_functionprotein-disulfide reductase [NAD(P)H] activity
C0051897biological_processpositive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
C0055114biological_processobsolete oxidation-reduction process
C0061692biological_processcellular detoxification of hydrogen peroxide
C0070062cellular_componentextracellular exosome
C0071731biological_processresponse to nitric oxide
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH C 106
ChainResidue
CGLN4
CGLU6
CALA10
CVAL86
CGLY87
CGLU103

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH C 107
ChainResidue
CGLY83
CHOH110
CHOH131
CLEU15
CPHE80
CLYS82

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH C 108
ChainResidue
BPHE41
BLYS94
CGLU47
CLYS48
CLYS82

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH B 106
ChainResidue
BGLY33
CTHR9
CGLN84
CLYS85

Functional Information from PROSITE/UniProt
site_idPS00194
Number of Residues19
DetailsTHIOREDOXIN_1 Thioredoxin family active site. VVdFSatWCGPCKmIkpfF
ChainResidueDetails
BVAL24-PHE42
AVAL24-PHE42

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"9108029","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsSite: {"description":"Deprotonates C-terminal active site Cys","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsSite: {"description":"Contributes to redox potential value","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues3
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P10639","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues6
DetailsModified residue: {"description":"S-nitrosocysteine","evidences":[{"source":"PubMed","id":"17260951","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues3
DetailsModified residue: {"description":"S-nitrosocysteine; alternate","evidences":[{"source":"PubMed","id":"16408020","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17606900","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues3
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P10639","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues103
DetailsDomain: {"description":"Thioredoxin","evidences":[{"source":"PROSITE-ProRule","id":"PRU00691","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
APRO34
ACYS35
ACYS32
AGLY33

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
CPRO34
CCYS35
CCYS32
CGLY33

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
BPRO34
BCYS35
BCYS32
BGLY33

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
ACYS35
ACYS32

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
CCYS35
CCYS32

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1mek
ChainResidueDetails
BCYS35
BCYS32

238582

PDB entries from 2025-07-09

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