2ICU

Crystal Structure of Hypothetical Protein YedK From Escherichia coli

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003677	molecular_function	DNA binding
A	0003697	molecular_function	single-stranded DNA binding
A	0005657	cellular_component	replication fork
A	0006508	biological_process	proteolysis
A	0006974	biological_process	DNA damage response
A	0008233	molecular_function	peptidase activity
A	0009432	biological_process	SOS response
A	0016787	molecular_function	hydrolase activity
A	0016829	molecular_function	lyase activity
A	0036297	biological_process	interstrand cross-link repair
A	0097681	biological_process	double-strand break repair via alternative nonhomologous end joining
A	0106300	biological_process	protein-DNA covalent cross-linking repair
A	0140431	molecular_function	DNA-(abasic site) binding
A	0160129	molecular_function	protein-DNA covalent cross-linking activity
B	0003677	molecular_function	DNA binding
B	0003697	molecular_function	single-stranded DNA binding
B	0005657	cellular_component	replication fork
B	0006508	biological_process	proteolysis
B	0006974	biological_process	DNA damage response
B	0008233	molecular_function	peptidase activity
B	0009432	biological_process	SOS response
B	0016787	molecular_function	hydrolase activity
B	0016829	molecular_function	lyase activity
B	0036297	biological_process	interstrand cross-link repair
B	0097681	biological_process	double-strand break repair via alternative nonhomologous end joining
B	0106300	biological_process	protein-DNA covalent cross-linking repair
B	0140431	molecular_function	DNA-(abasic site) binding
B	0160129	molecular_function	protein-DNA covalent cross-linking activity

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	Active site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"31235915","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31504793","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	Site: {"description":"Required to stabilize abasic sites","evidences":[{"source":"PubMed","id":"31235915","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	2
Details	Modified residue: {"description":"Thiazolidine linkage to a ring-opened DNA abasic site","evidences":[{"source":"PubMed","id":"31235915","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31504793","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

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