2HRD
Crystal structure of the uridine phosphorylase from Salmonella typhimurium in complex with thymine and phosphate ion at 1.70A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004850 | molecular_function | uridine phosphorylase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0009116 | biological_process | nucleoside metabolic process |
A | 0009164 | biological_process | nucleoside catabolic process |
A | 0009166 | biological_process | nucleotide catabolic process |
A | 0016757 | molecular_function | glycosyltransferase activity |
A | 0016763 | molecular_function | pentosyltransferase activity |
A | 0044206 | biological_process | UMP salvage |
B | 0003824 | molecular_function | catalytic activity |
B | 0004850 | molecular_function | uridine phosphorylase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0009116 | biological_process | nucleoside metabolic process |
B | 0009164 | biological_process | nucleoside catabolic process |
B | 0009166 | biological_process | nucleotide catabolic process |
B | 0016757 | molecular_function | glycosyltransferase activity |
B | 0016763 | molecular_function | pentosyltransferase activity |
B | 0044206 | biological_process | UMP salvage |
C | 0003824 | molecular_function | catalytic activity |
C | 0004850 | molecular_function | uridine phosphorylase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0009116 | biological_process | nucleoside metabolic process |
C | 0009164 | biological_process | nucleoside catabolic process |
C | 0009166 | biological_process | nucleotide catabolic process |
C | 0016757 | molecular_function | glycosyltransferase activity |
C | 0016763 | molecular_function | pentosyltransferase activity |
C | 0044206 | biological_process | UMP salvage |
D | 0003824 | molecular_function | catalytic activity |
D | 0004850 | molecular_function | uridine phosphorylase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0009116 | biological_process | nucleoside metabolic process |
D | 0009164 | biological_process | nucleoside catabolic process |
D | 0009166 | biological_process | nucleotide catabolic process |
D | 0016757 | molecular_function | glycosyltransferase activity |
D | 0016763 | molecular_function | pentosyltransferase activity |
D | 0044206 | biological_process | UMP salvage |
E | 0003824 | molecular_function | catalytic activity |
E | 0004850 | molecular_function | uridine phosphorylase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0005829 | cellular_component | cytosol |
E | 0009116 | biological_process | nucleoside metabolic process |
E | 0009164 | biological_process | nucleoside catabolic process |
E | 0009166 | biological_process | nucleotide catabolic process |
E | 0016757 | molecular_function | glycosyltransferase activity |
E | 0016763 | molecular_function | pentosyltransferase activity |
E | 0044206 | biological_process | UMP salvage |
F | 0003824 | molecular_function | catalytic activity |
F | 0004850 | molecular_function | uridine phosphorylase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0005829 | cellular_component | cytosol |
F | 0009116 | biological_process | nucleoside metabolic process |
F | 0009164 | biological_process | nucleoside catabolic process |
F | 0009166 | biological_process | nucleotide catabolic process |
F | 0016757 | molecular_function | glycosyltransferase activity |
F | 0016763 | molecular_function | pentosyltransferase activity |
F | 0044206 | biological_process | UMP salvage |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 A 801 |
Chain | Residue |
A | HOH166 |
A | HOH259 |
A | GLY1026 |
A | ARG1030 |
A | ARG1091 |
A | ILE1092 |
A | GLY1093 |
A | THR1094 |
F | ARG4048 |
site_id | AC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 B 802 |
Chain | Residue |
B | HOH307 |
B | HOH583 |
B | GLY6026 |
B | ARG6030 |
B | ARG6091 |
B | ILE6092 |
B | GLY6093 |
B | THR6094 |
D | ARG3048 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PO4 C 803 |
Chain | Residue |
C | HOH218 |
C | HOH365 |
C | GLY2026 |
C | ARG2091 |
C | ILE2092 |
C | GLY2093 |
C | THR2094 |
E | ARG5048 |
site_id | AC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 D 804 |
Chain | Residue |
B | ARG6048 |
D | HOH156 |
D | HOH364 |
D | GLY3026 |
D | ARG3030 |
D | ARG3091 |
D | ILE3092 |
D | GLY3093 |
D | THR3094 |
site_id | AC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 E 805 |
Chain | Residue |
C | ARG2048 |
E | HOH243 |
E | HOH352 |
E | GLY5026 |
E | ARG5030 |
E | ARG5091 |
E | ILE5092 |
E | GLY5093 |
E | THR5094 |
site_id | AC6 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 F 806 |
Chain | Residue |
A | ARG1048 |
F | HOH197 |
F | HOH244 |
F | GLY4026 |
F | ARG4030 |
F | ARG4091 |
F | ILE4092 |
F | GLY4093 |
F | THR4094 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PO4 F 807 |
Chain | Residue |
D | ARG3178 |
E | ARG5178 |
F | ARG4178 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PO4 A 808 |
Chain | Residue |
A | ARG1178 |
B | ARG6178 |
C | ARG2178 |
site_id | AC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE TDR A 901 |
Chain | Residue |
A | HOH66 |
A | HOH166 |
A | THR1094 |
A | THR1095 |
A | GLY1096 |
A | PHE1162 |
A | GLN1166 |
A | ARG1168 |
A | GLU1196 |
A | MET1197 |
A | ILE1220 |
A | VAL1221 |
site_id | BC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE TDR B 902 |
Chain | Residue |
B | HOH34 |
B | HOH307 |
B | THR6094 |
B | GLY6096 |
B | PHE6162 |
B | GLN6166 |
B | ARG6168 |
B | GLU6196 |
B | MET6197 |
B | ILE6220 |
B | VAL6221 |
site_id | BC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE TDR C 903 |
Chain | Residue |
C | HOH134 |
C | HOH218 |
C | THR2094 |
C | GLY2096 |
C | PHE2162 |
C | GLN2166 |
C | ARG2168 |
C | GLU2196 |
C | MET2197 |
C | ILE2220 |
C | VAL2221 |
C | PRO2229 |
site_id | BC3 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE TDR D 904 |
Chain | Residue |
D | PHE3162 |
D | GLN3166 |
D | ARG3168 |
D | TYR3195 |
D | GLU3196 |
D | MET3197 |
D | ILE3220 |
D | VAL3221 |
D | PRO3229 |
D | HOH156 |
D | HOH205 |
D | THR3094 |
D | THR3095 |
D | GLY3096 |
site_id | BC4 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE TDR E 905 |
Chain | Residue |
E | HOH69 |
E | HOH243 |
E | THR5094 |
E | THR5095 |
E | GLY5096 |
E | PHE5162 |
E | GLN5166 |
E | ARG5168 |
E | GLU5196 |
E | MET5197 |
E | ILE5220 |
E | VAL5221 |
E | PRO5229 |
site_id | BC5 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE TDR F 906 |
Chain | Residue |
F | HOH56 |
F | HOH197 |
F | THR4094 |
F | THR4095 |
F | GLY4096 |
F | PHE4162 |
F | GLN4166 |
F | ARG4168 |
F | GLU4196 |
F | MET4197 |
F | ILE4220 |
F | VAL4221 |
F | PRO4229 |
site_id | BC6 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE 1PE B 1001 |
Chain | Residue |
B | HOH544 |
B | HOH625 |
B | GLU6167 |
B | GLY6182 |
B | MET6184 |
B | GLU6185 |
B | ARG6223 |
B | THR6224 |
B | GLN6225 |
site_id | BC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL F 1011 |
Chain | Residue |
B | THR6111 |
B | VAL6131 |
B | ALA6132 |
B | PHE6134 |
F | THR4111 |
F | ALA4132 |
F | ASP4133 |
F | PHE4134 |
F | THR4137 |
site_id | BC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL A 1254 |
Chain | Residue |
A | THR1111 |
A | VAL1131 |
A | ALA1132 |
A | ASP1133 |
A | PHE1134 |
E | THR5111 |
E | ALA5132 |
E | ASP5133 |
E | PHE5134 |
E | THR5137 |
site_id | BC9 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL C 1013 |
Chain | Residue |
C | THR2111 |
C | VAL2131 |
C | ALA2132 |
C | ASP2133 |
C | PHE2134 |
D | THR3111 |
D | VAL3131 |
D | ALA3132 |
D | PHE3134 |
D | THR3137 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL B 1014 |
Chain | Residue |
B | TYR6172 |
B | ARG6175 |
D | GLN3209 |
site_id | CC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL E 1015 |
Chain | Residue |
E | ARG5223 |
E | THR5224 |
Functional Information from PROSITE/UniProt
site_id | PS01232 |
Number of Residues | 16 |
Details | PNP_UDP_1 Purine and other phosphorylases family 1 signature. StGIGgPStSIaveEL |
Chain | Residue | Details |
A | SER1066-LEU1081 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1t0u |
Chain | Residue | Details |
A | ARG1223 | |
A | GLU1080 | |
A | HIS1008 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1t0u |
Chain | Residue | Details |
B | HIS6008 | |
B | GLU6080 | |
B | ARG6223 |
site_id | CSA3 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1t0u |
Chain | Residue | Details |
C | ARG2223 | |
C | GLU2080 | |
C | HIS2008 |
site_id | CSA4 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1t0u |
Chain | Residue | Details |
D | GLU3080 | |
D | HIS3008 | |
D | ARG3223 |
site_id | CSA5 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1t0u |
Chain | Residue | Details |
E | GLU5080 | |
E | ARG5223 | |
E | HIS5008 |
site_id | CSA6 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1t0u |
Chain | Residue | Details |
F | HIS4008 | |
F | GLU4080 | |
F | ARG4223 |