Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2HMJ

Crystal Structure of the Naphthalene 1,2-Dioxygenase Phe-352-Val Mutant.

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0009056biological_processcatabolic process
A0018625molecular_functionnaphthalene 1,2-dioxygenase activity
A0044237biological_processcellular metabolic process
A0046872molecular_functionmetal ion binding
A0051213molecular_functiondioxygenase activity
A0051537molecular_function2 iron, 2 sulfur cluster binding
B0009056biological_processcatabolic process
B0019380biological_process3-phenylpropionate catabolic process
B0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE A 450
ChainResidue
AHIS208
AHIS213
AASP362
AEDO818
AHOH1085

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 903
ChainResidue
AHOH1274
ALEU128
AASN129
ALYS130
ALYS131

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 908
ChainResidue
BGLN63
BGLN65
BHOH967
BHOH992
BHOH1037
BHOH1047

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 909
ChainResidue
BGLY59
BSER60
BGLU167
BLYS172

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 912
ChainResidue
ATRP439
AHIS440
AHOH1018
AHOH1070

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FES A 913
ChainResidue
ACYS81
AHIS83
AARG84
ACYS101
AHIS104
ATRP106

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 801
ChainResidue
ALEU31
AMET59
AGLY60
AILE61
AASP62
APHE152
ATYR376
AGLN377

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 802
ChainResidue
AHIS18
AVAL80
ACYS81
AARG82
ASER381
AASP382
AHOH923
AHOH966

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 804
ChainResidue
AGLU137
AALA139
AHOH1356

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 805
ChainResidue
AHOH1320
BASN91
BGLN94
BHOH950
BHOH1014

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 806
ChainResidue
BARG138
BALA158
BGLU160
BPHE177
BVAL178
BASP179
BHOH936

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 807
ChainResidue
APRO49
AALA50
AASP53
AHOH1035
AHOH1259
BARG78
BTYR79
BLYS80

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 810
ChainResidue
APRO118
APHE119
AHOH1068
AHOH1319

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 811
ChainResidue
BGLU83
BALA84
BHOH1106

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 813
ChainResidue
BTYR88
BGLN102
BMET191
BVAL192
BPHE193
BHOH928
BHOH937

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 814
ChainResidue
ALYS136
AGLN377
AHOH949
AHOH1357
AHOH1362

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 815
ChainResidue
AASP396
AALA397
AVAL398
APRO400
AHIS440
AHOH937
AHOH1018

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 816
ChainResidue
BASN82
BHOH1106
AARG342
AASP346
AHOH943
AHOH1079

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 817
ChainResidue
BLEU10
BSER12
BLYS113

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 818
ChainResidue
AHIS208
AHIS213
AFE450
AHOH1085
AHOH1222

site_idCC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 819
ChainResidue
AVAL55
ATHR56
AGLU92
APRO186
ALYS188
ATRP327
AHOH1016
AHOH1107
AHOH1199

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 820
ChainResidue
AVAL9
ASER10
AGLU11
AGLU442
AHOH980
AHOH1312

Functional Information from PROSITE/UniProt
site_idPS00570
Number of Residues24
DetailsRING_HYDROXYL_ALPHA Bacterial ring hydroxylating dioxygenases alpha-subunit signature. CrHRGktlvsveaGNakgfvCsYH
ChainResidueDetails
ACYS81-HIS104

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ndo
ChainResidueDetails
AHIS208
AASP205

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ndo
ChainResidueDetails
AHIS104

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon