2GRJ
Crystal structure of Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase) (tm1387) from THERMOTOGA MARITIMA at 2.60 A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004140 | molecular_function | dephospho-CoA kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0015937 | biological_process | coenzyme A biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
B | 0004140 | molecular_function | dephospho-CoA kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0015937 | biological_process | coenzyme A biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
C | 0004140 | molecular_function | dephospho-CoA kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0015937 | biological_process | coenzyme A biosynthetic process |
C | 0016301 | molecular_function | kinase activity |
D | 0004140 | molecular_function | dephospho-CoA kinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0015937 | biological_process | coenzyme A biosynthetic process |
D | 0016301 | molecular_function | kinase activity |
E | 0004140 | molecular_function | dephospho-CoA kinase activity |
E | 0005524 | molecular_function | ATP binding |
E | 0005737 | cellular_component | cytoplasm |
E | 0015937 | biological_process | coenzyme A biosynthetic process |
E | 0016301 | molecular_function | kinase activity |
F | 0004140 | molecular_function | dephospho-CoA kinase activity |
F | 0005524 | molecular_function | ATP binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0015937 | biological_process | coenzyme A biosynthetic process |
F | 0016301 | molecular_function | kinase activity |
G | 0004140 | molecular_function | dephospho-CoA kinase activity |
G | 0005524 | molecular_function | ATP binding |
G | 0005737 | cellular_component | cytoplasm |
G | 0015937 | biological_process | coenzyme A biosynthetic process |
G | 0016301 | molecular_function | kinase activity |
H | 0004140 | molecular_function | dephospho-CoA kinase activity |
H | 0005524 | molecular_function | ATP binding |
H | 0005737 | cellular_component | cytoplasm |
H | 0015937 | biological_process | coenzyme A biosynthetic process |
H | 0016301 | molecular_function | kinase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL H 181 |
Chain | Residue |
G | GLU162 |
H | LEU161 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL E 181 |
Chain | Residue |
E | THR160 |
E | LEU161 |
F | LEU161 |
F | GLU162 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL C 181 |
Chain | Residue |
D | LEU161 |
C | THR160 |
C | LEU161 |
D | THR160 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL E 182 |
Chain | Residue |
E | HIS27 |
F | ARG62 |
site_id | AC5 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE ADP A 200 |
Chain | Residue |
A | LYS8 |
A | GLY10 |
A | THR11 |
A | GLY12 |
A | LYS13 |
A | SER14 |
A | THR15 |
A | ARG134 |
A | ASN157 |
A | SER159 |
A | THR160 |
A | HOH202 |
B | GLU18 |
B | ILE19 |
B | ASN22 |
B | LEU161 |
B | GLU165 |
site_id | AC6 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE COD A 201 |
Chain | Residue |
A | ILE9 |
A | ASP32 |
A | HIS36 |
A | LEU39 |
A | ARG62 |
A | VAL69 |
A | LEU76 |
A | LEU79 |
A | GLU80 |
A | HIS84 |
A | MSE87 |
A | ALA107 |
A | LEU108 |
A | ARG111 |
A | ARG141 |
A | PHE144 |
A | GLN145 |
A | HOH202 |
site_id | AC7 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE ADP B 200 |
Chain | Residue |
A | GLU18 |
A | ILE19 |
A | ASN22 |
A | LEU161 |
A | GLU165 |
B | GLY10 |
B | THR11 |
B | GLY12 |
B | LYS13 |
B | SER14 |
B | THR15 |
B | ARG134 |
B | ASN157 |
B | SER159 |
B | THR160 |
B | LEU161 |
B | HOH202 |
B | HOH203 |
site_id | AC8 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE COD B 201 |
Chain | Residue |
B | ILE9 |
B | ASP32 |
B | HIS36 |
B | LEU39 |
B | ARG62 |
B | VAL69 |
B | PHE70 |
B | LEU76 |
B | LEU79 |
B | GLU80 |
B | HIS84 |
B | MSE87 |
B | ALA107 |
B | LEU108 |
B | ARG111 |
B | ARG141 |
B | PHE144 |
B | GLN145 |
B | HOH202 |
site_id | AC9 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE ADP C 200 |
Chain | Residue |
D | GLU165 |
C | GLY10 |
C | THR11 |
C | GLY12 |
C | LYS13 |
C | SER14 |
C | THR15 |
C | ARG134 |
C | ASN157 |
C | SER159 |
C | THR160 |
C | HOH202 |
D | GLU18 |
D | ILE19 |
D | ASN22 |
D | LEU161 |
site_id | BC1 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE COD C 201 |
Chain | Residue |
C | ILE9 |
C | ASP32 |
C | HIS36 |
C | LEU39 |
C | ARG62 |
C | VAL69 |
C | LEU76 |
C | GLU80 |
C | HIS84 |
C | MSE87 |
C | ALA107 |
C | LEU108 |
C | ARG111 |
C | ARG141 |
C | PHE144 |
C | GLN145 |
C | HOH202 |
site_id | BC2 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE ADP D 200 |
Chain | Residue |
C | GLU18 |
C | ILE19 |
C | ASN22 |
C | LEU161 |
C | GLU165 |
D | LYS8 |
D | GLY10 |
D | THR11 |
D | GLY12 |
D | LYS13 |
D | SER14 |
D | THR15 |
D | ARG134 |
D | ASN157 |
D | SER159 |
D | THR160 |
D | HOH202 |
site_id | BC3 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE COD D 201 |
Chain | Residue |
D | ILE9 |
D | ASP32 |
D | HIS36 |
D | LEU39 |
D | ARG62 |
D | VAL69 |
D | LEU76 |
D | LEU79 |
D | GLU80 |
D | HIS84 |
D | MSE87 |
D | LEU108 |
D | ARG111 |
D | ARG141 |
D | PHE144 |
D | GLN145 |
D | HOH202 |
site_id | BC4 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE ADP E 200 |
Chain | Residue |
E | GLY10 |
E | THR11 |
E | GLY12 |
E | LYS13 |
E | SER14 |
E | THR15 |
E | ARG134 |
E | ASN157 |
E | SER159 |
E | THR160 |
E | LEU161 |
E | HOH202 |
E | HOH207 |
F | GLU18 |
F | ASN22 |
F | LEU161 |
F | GLU165 |
site_id | BC5 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE COD E 201 |
Chain | Residue |
E | ILE9 |
E | ASP32 |
E | HIS36 |
E | LEU39 |
E | ARG62 |
E | LEU65 |
E | ALA66 |
E | VAL69 |
E | LEU76 |
E | LEU79 |
E | GLU80 |
E | HIS84 |
E | LEU108 |
E | ARG111 |
E | ARG141 |
E | PHE144 |
E | GLN145 |
E | HOH202 |
site_id | BC6 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE ADP F 200 |
Chain | Residue |
E | GLU18 |
E | ILE19 |
E | LEU161 |
E | GLU165 |
F | LYS8 |
F | GLY10 |
F | THR11 |
F | GLY12 |
F | LYS13 |
F | SER14 |
F | THR15 |
F | ARG134 |
F | ASN157 |
F | SER159 |
F | THR160 |
F | LEU161 |
site_id | BC7 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE COD F 201 |
Chain | Residue |
F | ILE9 |
F | ASP32 |
F | HIS36 |
F | LEU39 |
F | ARG62 |
F | VAL69 |
F | LEU76 |
F | LEU79 |
F | GLU80 |
F | HIS84 |
F | MSE87 |
F | LEU108 |
F | ARG111 |
F | ARG141 |
F | PHE144 |
F | GLN145 |
site_id | BC8 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE ADP G 200 |
Chain | Residue |
G | GLY10 |
G | GLY12 |
G | LYS13 |
G | SER14 |
G | THR15 |
G | ARG134 |
G | ASN157 |
G | SER159 |
G | THR160 |
G | LEU161 |
G | HOH202 |
H | GLU18 |
H | ILE19 |
H | ASN22 |
H | LEU161 |
H | GLU165 |
site_id | BC9 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE COD G 201 |
Chain | Residue |
G | ILE9 |
G | ASP32 |
G | HIS36 |
G | LEU39 |
G | ARG62 |
G | VAL69 |
G | LEU76 |
G | LEU79 |
G | GLU80 |
G | HIS84 |
G | MSE87 |
G | LEU108 |
G | ARG111 |
G | ARG141 |
G | PHE144 |
G | GLN145 |
G | HOH202 |
site_id | CC1 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE ADP H 200 |
Chain | Residue |
G | GLU18 |
G | ILE19 |
G | ASN22 |
G | LEU161 |
G | GLU165 |
H | GLY10 |
H | THR11 |
H | GLY12 |
H | LYS13 |
H | SER14 |
H | THR15 |
H | ARG134 |
H | ASN157 |
H | SER159 |
H | THR160 |
H | LEU161 |
H | HOH202 |
site_id | CC2 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE COD H 201 |
Chain | Residue |
H | ILE9 |
H | ASP32 |
H | HIS36 |
H | LEU39 |
H | ARG62 |
H | VAL69 |
H | PHE70 |
H | LEU76 |
H | LEU79 |
H | GLU80 |
H | HIS84 |
H | MSE87 |
H | LEU108 |
H | ARG111 |
H | ARG141 |
H | PHE144 |
H | GLN145 |
H | HOH202 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00376 |
Chain | Residue | Details |
A | GLY10 | |
B | GLY10 | |
C | GLY10 | |
D | GLY10 | |
E | GLY10 | |
F | GLY10 | |
G | GLY10 | |
H | GLY10 |