2GLP
Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) from Helicobacter pylori complexed with compound 1
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0006633 | biological_process | fatty acid biosynthetic process |
A | 0009245 | biological_process | lipid A biosynthetic process |
A | 0016829 | molecular_function | lyase activity |
A | 0016836 | molecular_function | hydro-lyase activity |
A | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006633 | biological_process | fatty acid biosynthetic process |
B | 0009245 | biological_process | lipid A biosynthetic process |
B | 0016829 | molecular_function | lyase activity |
B | 0016836 | molecular_function | hydro-lyase activity |
B | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006633 | biological_process | fatty acid biosynthetic process |
C | 0009245 | biological_process | lipid A biosynthetic process |
C | 0016829 | molecular_function | lyase activity |
C | 0016836 | molecular_function | hydro-lyase activity |
C | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006633 | biological_process | fatty acid biosynthetic process |
D | 0009245 | biological_process | lipid A biosynthetic process |
D | 0016829 | molecular_function | lyase activity |
D | 0016836 | molecular_function | hydro-lyase activity |
D | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0006633 | biological_process | fatty acid biosynthetic process |
E | 0009245 | biological_process | lipid A biosynthetic process |
E | 0016829 | molecular_function | lyase activity |
E | 0016836 | molecular_function | hydro-lyase activity |
E | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0006633 | biological_process | fatty acid biosynthetic process |
F | 0009245 | biological_process | lipid A biosynthetic process |
F | 0016829 | molecular_function | lyase activity |
F | 0016836 | molecular_function | hydro-lyase activity |
F | 0019171 | molecular_function | (3R)-hydroxyacyl-[acyl-carrier-protein] dehydratase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL A 1001 |
Chain | Residue |
A | HIS58 |
A | GLY67 |
B | HOH2096 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL B 1002 |
Chain | Residue |
A | HOH3007 |
A | HOH3015 |
A | HOH3094 |
B | GLY67 |
site_id | AC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL C 1003 |
Chain | Residue |
C | GLY67 |
D | HOH1045 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL D 1004 |
Chain | Residue |
D | HIS58 |
D | PRO66 |
D | GLY67 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL E 1005 |
Chain | Residue |
E | GLY67 |
F | HOH2027 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL F 1006 |
Chain | Residue |
E | HOH1012 |
E | HOH1025 |
F | GLY67 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BEN A 2001 |
Chain | Residue |
A | GLN9 |
A | GLN11 |
A | PHE12 |
A | HOH3038 |
site_id | AC8 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE BEN A 2004 |
Chain | Residue |
A | ILE20 |
A | LEU21 |
A | PRO22 |
A | HIS23 |
A | PHE83 |
A | ALA94 |
A | LYS97 |
A | ILE98 |
A | VAL99 |
A | ARG158 |
A | HOH3067 |
site_id | AC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE BEN A 2005 |
Chain | Residue |
A | GLN40 |
A | GLU124 |
A | VAL125 |
A | HOH3061 |
E | THR138 |
E | GLU148 |
E | HOH1050 |
E | HOH1098 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE BEN A 2007 |
Chain | Residue |
A | THR138 |
A | GLU148 |
A | HOH3095 |
A | HOH3100 |
E | GLU124 |
E | VAL125 |
E | LEU126 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BEN A 2009 |
Chain | Residue |
A | MET131 |
A | MET154 |
A | ILE155 |
F | LEU86 |
F | ILE93 |
site_id | BC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE BDE A 3001 |
Chain | Residue |
A | PHE59 |
A | LYS62 |
A | ILE64 |
A | ILE111 |
A | PRO112 |
B | ILE98 |
B | TYR100 |
B | GLU159 |
B | HOH2095 |
site_id | BC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE BEN B 2006 |
Chain | Residue |
B | ILE20 |
B | LEU21 |
B | PRO22 |
B | HIS23 |
B | PHE83 |
B | LYS97 |
B | VAL99 |
site_id | BC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE BEN B 2008 |
Chain | Residue |
B | TRP87 |
B | GLY88 |
B | HOH2098 |
E | LEU86 |
E | TRP87 |
E | GLY130 |
E | MET131 |
site_id | BC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE BEN C 2010 |
Chain | Residue |
C | ALA38 |
C | THR84 |
C | SER85 |
C | LEU86 |
C | TRP87 |
C | GLY88 |
D | GLN40 |
D | HOH1082 |
site_id | BC7 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE BDE C 3002 |
Chain | Residue |
C | ILE20 |
C | LEU21 |
C | PRO22 |
C | PHE83 |
C | ALA94 |
C | LYS97 |
C | ILE98 |
C | VAL99 |
C | HOH3069 |
C | HOH3070 |
D | LYS62 |
D | ILE64 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE BEN F 2002 |
Chain | Residue |
F | MET27 |
F | HOH2029 |
F | HOH2055 |
B | HOH2050 |
E | PRO26 |
E | ASP53 |
F | PRO26 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BEN F 2003 |
Chain | Residue |
F | LYS41 |
F | HIS122 |
F | LEU123 |
F | GLU124 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | ACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_00406 |
Chain | Residue | Details |
A | HIS58 | |
B | HIS58 | |
C | HIS58 | |
D | HIS58 | |
E | HIS58 | |
F | HIS58 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
F | GLU72 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
A | GLU72 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
D | GLU72 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
C | GLU72 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
E | GLU72 |
site_id | CSA6 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1mka |
Chain | Residue | Details |
B | GLU72 |