Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2GFJ

Crystal structure of the zinc-beta-lactamase L1 from stenotrophomonas maltophilia (inhibitor 1)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0030655biological_processbeta-lactam antibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
B0008270molecular_functionzinc ion binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0030655biological_processbeta-lactam antibiotic catabolic process
B0042597cellular_componentperiplasmic space
B0046677biological_processresponse to antibiotic
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
AHIS116
AHIS118
AHIS196
AZN402
AVI1410

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 402
ChainResidue
AVI1410
AHOH1470
AASP120
AHIS121
AHIS263
AZN401

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BHIS116
BHIS118
BHIS196
BZN402
BVI2410

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 402
ChainResidue
BASP120
BHIS121
BHIS263
BZN401
BVI2410

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 1001
ChainResidue
AARG252
ALYS297
BARG209
BALA275
BALA289
BGLY290
BALA291
BHOH2569

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1002
ChainResidue
AARG172
AVAL179
AILE180
ATHR181
ASO41008

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 1003
ChainResidue
AARG209
AALA275
AALA289
AGLY290
AALA291
AHOH1602
AHOH1615
BARG252
BLYS297

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 1004
ChainResidue
BARG102
BGLY211
BHOH2624

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1005
ChainResidue
BARG172
BVAL179
BILE180
BTHR181
BHOH2494
BHOH2604

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 1006
ChainResidue
AARG252
BARG209

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1007
ChainResidue
AARG102
AHOH1524
AHOH1557

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1008
ChainResidue
AARG110
AARG172
AILE180
ATHR181
AVAL182
ASO41002

site_idBC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE VI A 1410
ChainResidue
ATRP39
AHIS116
AHIS118
AASP120
AHIS121
AILE162
AHIS196
ASER225
APRO227
AHIS263
AZN401
AZN402
AHOH1470

site_idBC5
Number of Residues12
DetailsBINDING SITE FOR RESIDUE VI B 2410
ChainResidue
BTRP39
BHIS116
BHIS118
BASP120
BHIS121
BILE162
BHIS196
BSER225
BPRO227
BHIS263
BZN401
BZN402

Functional Information from PROSITE/UniProt
site_idPS00743
Number of Residues21
DetailsBETA_LACTAMASE_B_1 Beta-lactamases class B signature 1. LlSHaHADhaGPvaelkrrtG
ChainResidueDetails
ALEU113-GLY133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:17999929, ECO:0000269|PubMed:9811546
ChainResidueDetails
AHIS116
BHIS196
AHIS118
AASP120
AHIS121
AHIS196
BHIS116
BHIS118
BASP120
BHIS121

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P25910
ChainResidueDetails
AASP220
BASP220

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:9811546
ChainResidueDetails
AHIS263
BHIS263

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qh5
ChainResidueDetails
AASP120

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qh5
ChainResidueDetails
BASP120

site_idMCSA1
Number of Residues7
DetailsM-CSA 258
ChainResidueDetails
AHIS116metal ligand
AHIS118metal ligand
AASP120metal ligand
AHIS121metal ligand
AHIS196metal ligand
ATYR229electrostatic stabiliser, hydrogen bond donor
AHIS263metal ligand

site_idMCSA2
Number of Residues7
DetailsM-CSA 258
ChainResidueDetails
BHIS116metal ligand
BHIS118metal ligand
BASP120metal ligand
BHIS121metal ligand
BHIS196metal ligand
BTYR229electrostatic stabiliser, hydrogen bond donor
BHIS263metal ligand

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon