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2G80

Crystal structure of UTR4 protein (Unknown transcript 4 protein) (yel038w) from Saccharomyces cerevisiae at 2.28 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0009086biological_processmethionine biosynthetic process
A0016787molecular_functionhydrolase activity
A0019284biological_processL-methionine salvage from S-adenosylmethionine
A0019509biological_processL-methionine salvage from methylthioadenosine
A0043715molecular_function2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity
A0043716molecular_function2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity
A0043874molecular_functionacireductone synthase activity
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0009086biological_processmethionine biosynthetic process
B0016787molecular_functionhydrolase activity
B0019284biological_processL-methionine salvage from S-adenosylmethionine
B0019509biological_processL-methionine salvage from methylthioadenosine
B0043715molecular_function2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity
B0043716molecular_function2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity
B0043874molecular_functionacireductone synthase activity
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0009086biological_processmethionine biosynthetic process
C0016787molecular_functionhydrolase activity
C0019284biological_processL-methionine salvage from S-adenosylmethionine
C0019509biological_processL-methionine salvage from methylthioadenosine
C0043715molecular_function2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity
C0043716molecular_function2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity
C0043874molecular_functionacireductone synthase activity
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0005634cellular_componentnucleus
D0005737cellular_componentcytoplasm
D0009086biological_processmethionine biosynthetic process
D0016787molecular_functionhydrolase activity
D0019284biological_processL-methionine salvage from S-adenosylmethionine
D0019509biological_processL-methionine salvage from methylthioadenosine
D0043715molecular_function2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity
D0043716molecular_function2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity
D0043874molecular_functionacireductone synthase activity
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 500
ChainResidue
AASP25
AGLU27
AASP200
AHOH509
AHOH517
AHOH593

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 500
ChainResidue
BHOH515
BHOH548
BHOH559
BASP25
BGLU27
BASP200

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 500
ChainResidue
CASP25
CGLU27
CASP200
CHOH510
CHOH511
CHOH548

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 500
ChainResidue
DASP25
DGLU27
DASP200
DHOH562
DHOH563
DHOH564

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG C 501
ChainResidue
AHIS79
AASP90
AHOH575
AHOH601
CASP90
CHOH572
CHOH573

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG D 501
ChainResidue
DASP90
DHOH541
DHOH565
DHOH566

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PE4 A 501
ChainResidue
APRO113
AVAL114
ATYR115
AGLN147
BGLU38

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 502
ChainResidue
CGLU38
DPRO113
DGLN147
DPRO149
DHOH504
DHOH533

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE GOL C 502
ChainResidue
CALA78

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03117, ECO:0000269|Ref.7
ChainResidueDetails
AASP25
DASP25
DGLU27
DASP200
AGLU27
AASP200
BASP25
BGLU27
BASP200
CASP25
CGLU27
CASP200

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03117
ChainResidueDetails
ASER132
ALYS175
BSER132
BLYS175
CSER132
CLYS175
DSER132
DLYS175

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PDB entries from 2024-09-11

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