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2FDI

Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T (air 3 hours)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006281biological_processDNA repair
A0006307biological_processDNA alkylation repair
A0006974biological_processDNA damage response
A0008198molecular_functionferrous iron binding
A0016491molecular_functionoxidoreductase activity
A0035513biological_processoxidative RNA demethylation
A0035515molecular_functionoxidative RNA demethylase activity
A0035516molecular_functionbroad specificity oxidative DNA demethylase activity
A0042245biological_processRNA repair
A0046872molecular_functionmetal ion binding
A0051213molecular_functiondioxygenase activity
A0070989biological_processoxidative demethylation
A0072702biological_processresponse to methyl methanesulfonate
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE2 A 300
ChainResidue
AHIS131
AASP133
AHIS187
AAKG400
ASIN401
AHOH601
AHOH606

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG A 400
ChainResidue
ALEU128
AHIS131
AASP133
AHIS187
AILE189
AARG204
AASN206
AARG210
AFE2300
AHOH601
AHOH606
AHOH615
BMA7502
AASN120
ATYR122

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE SIN A 401
ChainResidue
ATYR122
ALEU128
AHIS131
AHIS187
AILE189
AARG204
AASN206
ATHR208
AFE2300
AHOH601
AHOH606
AHOH615

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues100
DetailsDomain: {"description":"Fe2OG dioxygenase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00805","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16482161","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20084272","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues10
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00805","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"16482161","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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