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2F67

Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.6 A resolution with BENZO[CD]INDOL-2(1H)-ONE bound

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0009159biological_processdeoxyribonucleoside monophosphate catabolic process
A0031981cellular_componentnuclear lumen
A0070694molecular_function5-hydroxymethyl-dUMP N-hydrolase activity
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0009159biological_processdeoxyribonucleoside monophosphate catabolic process
B0031981cellular_componentnuclear lumen
B0070694molecular_function5-hydroxymethyl-dUMP N-hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 371
ChainResidue
BHIS6
BHIS8
BMSE9
BLYS11
BARG112
BARG125
BHOH437
BHOH457
BHOH518

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 381
ChainResidue
AHIS6
AHIS8
AMSE9
ALYS11
AARG112
AARG125
AHOH478
AHOH501

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 361
ChainResidue
AHIS7
AARG10
AGLU39
AASN40
ASER160
AHOH420

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 12B B 372
ChainResidue
APHE20
APRO46
AGLU50
AILE57
AASN61
AGOL372
BGLU127
BASN134
BLEU135

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 12B A 382
ChainResidue
AGLU127
AASN134
ALEU135
BPHE20
BPRO46
BGLU50
BILE57
BASN61
BGOL382

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 372
ChainResidue
AALA15
AGLY16
AVAL19
APHE20
AASP84
AGLY86
ATHR87
AGLU90
BASN134
B12B372

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 382
ChainResidue
AASN134
A12B382
BALA15
BGLY16
BVAL19
BPHE20
BASP84
BGLY86
BGLU90

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1f8x
ChainResidueDetails
ATYR13
AGLU90
AASN61
AASP84

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1f8x
ChainResidueDetails
BTYR13
BGLU90
BASN61
BASP84

237735

PDB entries from 2025-06-18

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