2EQ8
Crystal structure of lipoamide dehydrogenase from thermus thermophilus HB8 with psbdp
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
A | 0050660 | molecular_function | flavin adenine dinucleotide binding |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
B | 0050660 | molecular_function | flavin adenine dinucleotide binding |
C | 0016746 | molecular_function | acyltransferase activity |
D | 0000166 | molecular_function | nucleotide binding |
D | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
D | 0050660 | molecular_function | flavin adenine dinucleotide binding |
E | 0000166 | molecular_function | nucleotide binding |
E | 0004148 | molecular_function | dihydrolipoyl dehydrogenase activity |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0016668 | molecular_function | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
E | 0050660 | molecular_function | flavin adenine dinucleotide binding |
F | 0016746 | molecular_function | acyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 41 |
Details | BINDING SITE FOR RESIDUE FAD A 4482 |
Chain | Residue |
A | ILE15 |
A | CYS47 |
A | GLY51 |
A | CYS52 |
A | THR55 |
A | LYS56 |
A | GLY117 |
A | PHE118 |
A | ALA119 |
A | ALA146 |
A | THR147 |
A | GLY16 |
A | GLY148 |
A | SER166 |
A | ARG274 |
A | ARG277 |
A | LEU281 |
A | GLY313 |
A | ASP314 |
A | LEU320 |
A | LEU321 |
A | ALA322 |
A | GLY18 |
A | HIS323 |
A | TYR353 |
A | HOH4483 |
A | HOH4484 |
A | HOH4494 |
A | HOH4503 |
A | HOH4505 |
A | HOH4506 |
A | HOH4523 |
A | HOH4540 |
A | PRO19 |
A | HOH4804 |
B | HIS446 |
A | GLY20 |
A | GLU39 |
A | ALA40 |
A | GLU42 |
A | GLY45 |
site_id | AC2 |
Number of Residues | 40 |
Details | BINDING SITE FOR RESIDUE FAD B 5482 |
Chain | Residue |
A | HIS446 |
B | ILE15 |
B | GLY16 |
B | GLY18 |
B | PRO19 |
B | GLY20 |
B | GLU39 |
B | ALA40 |
B | GLU42 |
B | GLY45 |
B | CYS47 |
B | GLY51 |
B | CYS52 |
B | THR55 |
B | LYS56 |
B | GLY117 |
B | PHE118 |
B | ALA119 |
B | ALA146 |
B | THR147 |
B | GLY148 |
B | SER166 |
B | ARG274 |
B | ARG277 |
B | GLY313 |
B | ASP314 |
B | LEU320 |
B | LEU321 |
B | ALA322 |
B | HIS323 |
B | ALA325 |
B | TYR353 |
B | HOH5484 |
B | HOH5490 |
B | HOH5492 |
B | HOH5516 |
B | HOH5525 |
B | HOH5559 |
B | HOH5596 |
B | HOH5771 |
site_id | AC3 |
Number of Residues | 39 |
Details | BINDING SITE FOR RESIDUE FAD D 2482 |
Chain | Residue |
D | THR147 |
D | GLY148 |
D | SER166 |
D | ARG274 |
D | ARG277 |
D | GLY313 |
D | ASP314 |
D | LEU320 |
D | LEU321 |
D | ALA322 |
D | HIS323 |
D | TYR353 |
D | HOH2486 |
D | HOH2491 |
D | HOH2502 |
D | HOH2504 |
D | HOH2507 |
D | HOH2508 |
D | HOH2512 |
D | HOH2658 |
E | HIS446 |
D | ILE15 |
D | GLY16 |
D | GLY18 |
D | PRO19 |
D | GLY20 |
D | GLU39 |
D | ALA40 |
D | GLU42 |
D | GLY45 |
D | CYS47 |
D | GLY51 |
D | CYS52 |
D | THR55 |
D | LYS56 |
D | GLY117 |
D | PHE118 |
D | ALA119 |
D | ALA146 |
site_id | AC4 |
Number of Residues | 40 |
Details | BINDING SITE FOR RESIDUE FAD E 3482 |
Chain | Residue |
D | HIS446 |
E | ILE15 |
E | GLY16 |
E | GLY18 |
E | PRO19 |
E | GLY20 |
E | GLU39 |
E | ALA40 |
E | GLU42 |
E | GLY45 |
E | CYS47 |
E | GLY51 |
E | CYS52 |
E | THR55 |
E | LYS56 |
E | GLY117 |
E | PHE118 |
E | ALA119 |
E | ALA146 |
E | THR147 |
E | GLY148 |
E | SER166 |
E | ARG274 |
E | ARG277 |
E | GLY313 |
E | ASP314 |
E | LEU320 |
E | LEU321 |
E | ALA322 |
E | HIS323 |
E | ALA325 |
E | TYR353 |
E | HOH3484 |
E | HOH3486 |
E | HOH3490 |
E | HOH3499 |
E | HOH3545 |
E | HOH3556 |
E | HOH3625 |
E | HOH3644 |
Functional Information from PROSITE/UniProt
site_id | PS00076 |
Number of Residues | 11 |
Details | PYRIDINE_REDOX_1 Pyridine nucleotide-disulphide oxidoreductases class-I active site. GGvCLnvGCIP |
Chain | Residue | Details |
A | GLY44-PRO54 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
A | CYS47 | |
A | CYS52 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
B | CYS47 | |
B | CYS52 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
D | CYS47 | |
D | CYS52 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
E | CYS47 | |
E | CYS52 |
site_id | CSA5 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
A | GLU451 | |
A | HIS446 |
site_id | CSA6 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
B | GLU451 | |
B | HIS446 |
site_id | CSA7 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
D | GLU451 | |
D | HIS446 |
site_id | CSA8 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1get |
Chain | Residue | Details |
E | GLU451 | |
E | HIS446 |