2E8W
S. cerevisiae geranylgeranyl pyrophosphate synthase in complex with magnesium and IPP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004161 | molecular_function | dimethylallyltranstransferase activity |
| A | 0004311 | molecular_function | geranylgeranyl diphosphate synthase activity |
| A | 0004337 | molecular_function | (2E,6E)-farnesyl diphosphate synthase activity |
| A | 0004659 | molecular_function | prenyltransferase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0008299 | biological_process | isoprenoid biosynthetic process |
| A | 0015031 | biological_process | protein transport |
| A | 0016114 | biological_process | terpenoid biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0033384 | biological_process | geranyl diphosphate biosynthetic process |
| A | 0033386 | biological_process | geranylgeranyl diphosphate biosynthetic process |
| A | 0045337 | biological_process | farnesyl diphosphate biosynthetic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004161 | molecular_function | dimethylallyltranstransferase activity |
| B | 0004311 | molecular_function | geranylgeranyl diphosphate synthase activity |
| B | 0004337 | molecular_function | (2E,6E)-farnesyl diphosphate synthase activity |
| B | 0004659 | molecular_function | prenyltransferase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0008299 | biological_process | isoprenoid biosynthetic process |
| B | 0015031 | biological_process | protein transport |
| B | 0016114 | biological_process | terpenoid biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0033384 | biological_process | geranyl diphosphate biosynthetic process |
| B | 0033386 | biological_process | geranylgeranyl diphosphate biosynthetic process |
| B | 0045337 | biological_process | farnesyl diphosphate biosynthetic process |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 1201 |
| Chain | Residue |
| A | ASP80 |
| A | ASP84 |
| A | HOH539 |
| A | HOH540 |
| A | IPE1001 |
| A | MG1202 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 1202 |
| Chain | Residue |
| A | HOH677 |
| A | IPE1001 |
| A | MG1201 |
| A | ASP80 |
| A | ASP84 |
| A | HOH538 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE MG B 1203 |
| Chain | Residue |
| B | ASP80 |
| B | ASP84 |
| B | IPE1002 |
| B | MG1204 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 1204 |
| Chain | Residue |
| B | ASP80 |
| B | ASP84 |
| B | HOH401 |
| B | IPE1002 |
| B | MG1203 |
| site_id | AC5 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE IPE A 1001 |
| Chain | Residue |
| A | ASP80 |
| A | ASP84 |
| A | ARG89 |
| A | LEU143 |
| A | LYS174 |
| A | GLN211 |
| A | ASP214 |
| A | LYS238 |
| A | HOH459 |
| A | HOH539 |
| A | HOH540 |
| A | HOH589 |
| A | HOH677 |
| A | MG1201 |
| A | MG1202 |
| site_id | AC6 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE IPE B 1002 |
| Chain | Residue |
| B | SER76 |
| B | ASP80 |
| B | ASP84 |
| B | ARG89 |
| B | LEU143 |
| B | LYS174 |
| B | GLN211 |
| B | ASP214 |
| B | LYS238 |
| B | HOH526 |
| B | HOH785 |
| B | IPE1003 |
| B | MG1203 |
| B | MG1204 |
| site_id | AC7 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE IPE B 1003 |
| Chain | Residue |
| B | LYS38 |
| B | PRO39 |
| B | GLY40 |
| B | ARG44 |
| B | HIS73 |
| B | LEU77 |
| B | ARG90 |
| B | TYR210 |
| B | GLN211 |
| B | ASP214 |
| B | HOH631 |
| B | HOH796 |
| B | IPE1002 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 20 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17535895","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"16554305","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17535895","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Site: {"description":"Important for determining product chain length"} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1fps |
| Chain | Residue | Details |
| A | TYR210 | |
| A | ARG89 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1fps |
| Chain | Residue | Details |
| B | TYR210 | |
| B | ARG89 |
