Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2E84

Crystal structure of High-Molecular Weight Cytochrome c from Desulfovibrio vulgaris (Miyazaki F) in the presence of zinc ion

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0009055	molecular_function	electron transfer activity
A	0020037	molecular_function	heme binding
A	0030313	cellular_component	cell envelope
A	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN A 557

Chain	Residue
A	GLU190
A	LYS193
A	GLU415
A	ASP419
A	GLU553

site_id	AC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN A 558

Chain	Residue
A	HIS534
A	GLU540
A	GLU549

site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN A 559

Chain	Residue
A	GLU442
A	HEM1309
A	LYS355

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN A 560

Chain	Residue
A	HIS320
A	LYS323
A	ILE324
A	ASP325
A	HOH1361

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE NA A 561

Chain	Residue
A	LYS307
A	LYS523
A	HIS527
A	HOH1409

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NA A 562

Chain	Residue
A	LYS32
A	GLU124
A	HOH1494

site_id	AC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE NA A 563

Chain	Residue
A	ASP136
A	HOH1513

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NA A 564

Chain	Residue
A	MET279
A	HEM1308
A	HOH1319

site_id	AC9
Number of Residues	19
Details	BINDING SITE FOR RESIDUE HEM A 1301

Chain	Residue
A	ILE48
A	PHE64
A	HIS66
A	HIS69
A	GLU82
A	CYS83
A	CYS86
A	HIS87
A	LEU97
A	LYS98
A	PHE99
A	ARG101
A	TYR114
A	ARG221
A	HIS225
A	ILE229
A	HEM1307
A	HOH1428
A	HOH1512

site_id	BC1
Number of Residues	17
Details	BINDING SITE FOR RESIDUE HEM A 1302

Chain	Residue
A	VAL62
A	THR63
A	PHE64
A	ARG68
A	HIS69
A	VAL73
A	PHE99
A	ASN117
A	CYS118
A	CYS121
A	HIS122
A	GLN125
A	LYS131
A	THR132
A	GLY133
A	HOH1417
A	HOH1469

site_id	BC2
Number of Residues	19
Details	BINDING SITE FOR RESIDUE HEM A 1303

Chain	Residue
A	ILE48
A	GLY49
A	VAL50
A	MET51
A	LEU57
A	GLU58
A	LEU59
A	VAL62
A	LYS111
A	TYR114
A	HIS115
A	CYS118
A	ILE119
A	GLN135
A	ASP136
A	GLU138
A	CYS139
A	CYS142
A	HIS143

site_id	BC3
Number of Residues	20
Details	BINDING SITE FOR RESIDUE HEM A 1304

Chain	Residue
A	HEM1306
A	HOH1333
A	HOH1470
A	HOH1477
A	GLY156
A	LEU157
A	HIS162
A	HIS165
A	ASN180
A	CYS181
A	CYS184
A	HIS185
A	GLU202
A	SER204
A	LEU270
A	GLU271
A	THR315
A	CYS316
A	ARG317
A	ILE324

site_id	BC4
Number of Residues	14
Details	BINDING SITE FOR RESIDUE HEM A 1305

Chain	Residue
A	LYS94
A	HIS185
A	HIS186
A	LEU195
A	ASP203
A	SER204
A	CYS205
A	CYS208
A	HIS209
A	LYS216
A	PRO218
A	ALA223
A	GLN227
A	HOH1476

site_id	BC5
Number of Residues	14
Details	BINDING SITE FOR RESIDUE HEM A 1306

Chain	Residue
A	LEU161
A	ARG164
A	HIS165
A	ILE171
A	GLN227
A	CYS228
A	CYS231
A	HIS232
A	ASP243
A	SER244
A	GLY245
A	PHE261
A	HEM1304
A	HOH1474

site_id	BC6
Number of Residues	19
Details	BINDING SITE FOR RESIDUE HEM A 1307

Chain	Residue
A	VAL46
A	HIS66
A	GLN154
A	ILE155
A	ARG206
A	LEU220
A	ARG221
A	ALA224
A	HIS225
A	CYS228
A	HIS232
A	VAL247
A	SER248
A	CYS249
A	CYS252
A	HIS253
A	HEM1301
A	HOH1331
A	HOH1503

site_id	BC7
Number of Residues	17
Details	BINDING SITE FOR RESIDUE HEM A 1308

Chain	Residue
A	ARG272
A	GLN274
A	PHE304
A	HIS306
A	HIS309
A	SER313
A	THR315
A	CYS316
A	CYS319
A	HIS320
A	ASP325
A	ASN326
A	CYS327
A	THR328
A	NA564
A	HOH1318
A	HOH1364

site_id	BC8
Number of Residues	17
Details	BINDING SITE FOR RESIDUE HEM A 1309

Chain	Residue
A	CYS319
A	HIS320
A	HIS321
A	VAL322
A	ASN326
A	CYS327
A	CYS330
A	HIS331
A	ASP338
A	GLY339
A	ASN340
A	ALA347
A	SER353
A	LYS355
A	GLU442
A	ZN559
A	HOH1452

site_id	BC9
Number of Residues	13
Details	BINDING SITE FOR RESIDUE HEM A 1310

Chain	Residue
A	VAL302
A	PHE304
A	ASN305
A	HIS309
A	MET354
A	SER356
A	CYS357
A	CYS360
A	HIS361
A	ARG428
A	LEU476
A	THR479
A	HEM1312

site_id	CC1
Number of Residues	19
Details	BINDING SITE FOR RESIDUE HEM A 1311

Chain	Residue
A	VAL365
A	ALA369
A	CYS370
A	CYS373
A	HIS374
A	MET377
A	THR379
A	GLN384
A	PRO385
A	ILE471
A	ASP474
A	LEU476
A	PHE480
A	HIS481
A	THR486
A	VAL487
A	ALA489
A	GLY490
A	HOH1385

site_id	CC2
Number of Residues	18
Details	BINDING SITE FOR RESIDUE HEM A 1312

Chain	Residue
A	VAL280
A	LEU281
A	PRO282
A	GLY297
A	ALA298
A	MET299
A	ILE344
A	MET348
A	HIS349
A	CYS357
A	HIS361
A	GLN384
A	ALA388
A	CYS389
A	CYS392
A	HIS393
A	HEM1310
A	HOH1366

site_id	CC3
Number of Residues	17
Details	BINDING SITE FOR RESIDUE HEM A 1313

Chain	Residue
A	THR434
A	LEU435
A	ILE440
A	ILE446
A	LEU458
A	HIS460
A	VAL487
A	CYS488
A	CYS491
A	HIS492
A	PRO501
A	LYS503
A	CYS504
A	TYR526
A	HEM1315
A	HOH1471
A	HOH1503

site_id	CC4
Number of Residues	18
Details	BINDING SITE FOR RESIDUE HEM A 1314

Chain	Residue
A	PHE376
A	LYS378
A	CYS491
A	HIS492
A	HIS493
A	ASN494
A	PRO502
A	LYS503
A	CYS504
A	CYS507
A	HIS508
A	ASP518
A	PRO520
A	ALA525
A	GLN528
A	GLN529
A	HOH1328
A	HOH1329

site_id	CC5
Number of Residues	15
Details	BINDING SITE FOR RESIDUE HEM A 1315

Chain	Residue
A	LEU458
A	LYS462
A	ILE463
A	THR466
A	LEU467
A	GLN529
A	CYS530
A	CYS533
A	HIS534
A	LEU539
A	GLU549
A	CYS550
A	HEM1313
A	HOH1380
A	HOH1472

site_id	CC6
Number of Residues	19
Details	BINDING SITE FOR RESIDUE HEM A 1316

Chain	Residue
A	ALA422
A	ILE446
A	GLY447
A	VAL448
A	LEU449
A	SER450
A	ASP451
A	LYS452
A	TYR453
A	SER456
A	LYS523
A	TYR526
A	HIS527
A	CYS530
A	MET531
A	CYS547
A	CYS550
A	HIS551
A	HOH1502

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)