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2E76

Crystal Structure of the Cytochrome b6f Complex with tridecyl-stigmatellin (TDS) from M.laminosus

Functional Information from GO Data
ChainGOidnamespacecontents
A0009055molecular_functionelectron transfer activity
A0009579cellular_componentthylakoid
A0015979biological_processphotosynthesis
A0016020cellular_componentmembrane
A0016491molecular_functionoxidoreductase activity
A0022904biological_processrespiratory electron transport chain
A0031676cellular_componentplasma membrane-derived thylakoid membrane
A0042651cellular_componentthylakoid membrane
A0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
A0046872molecular_functionmetal ion binding
B0008121molecular_functionubiquinol-cytochrome-c reductase activity
B0009055molecular_functionelectron transfer activity
B0009579cellular_componentthylakoid
B0009767biological_processphotosynthetic electron transport chain
B0015979biological_processphotosynthesis
B0016020cellular_componentmembrane
B0016491molecular_functionoxidoreductase activity
B0031676cellular_componentplasma membrane-derived thylakoid membrane
B0042651cellular_componentthylakoid membrane
B0045156molecular_functionelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
B0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
B1902600biological_processproton transmembrane transport
C0005506molecular_functioniron ion binding
C0009055molecular_functionelectron transfer activity
C0009579cellular_componentthylakoid
C0015979biological_processphotosynthesis
C0016020cellular_componentmembrane
C0020037molecular_functionheme binding
C0031676cellular_componentplasma membrane-derived thylakoid membrane
C0042651cellular_componentthylakoid membrane
C0046872molecular_functionmetal ion binding
D0009496molecular_functionplastoquinol--plastocyanin reductase activity
D0009579cellular_componentthylakoid
D0015979biological_processphotosynthesis
D0016020cellular_componentmembrane
D0031676cellular_componentplasma membrane-derived thylakoid membrane
D0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
D0046872molecular_functionmetal ion binding
D0051537molecular_function2 iron, 2 sulfur cluster binding
D0055085biological_processtransmembrane transport
E0009055molecular_functionelectron transfer activity
E0009512cellular_componentcytochrome b6f complex
E0009579cellular_componentthylakoid
E0015979biological_processphotosynthesis
E0016020cellular_componentmembrane
E0031676cellular_componentplasma membrane-derived thylakoid membrane
E0042651cellular_componentthylakoid membrane
E0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
F0009055molecular_functionelectron transfer activity
F0009512cellular_componentcytochrome b6f complex
F0009579cellular_componentthylakoid
F0015979biological_processphotosynthesis
F0016020cellular_componentmembrane
F0031676cellular_componentplasma membrane-derived thylakoid membrane
F0042651cellular_componentthylakoid membrane
G0009512cellular_componentcytochrome b6f complex
G0009579cellular_componentthylakoid
G0015979biological_processphotosynthesis
G0016020cellular_componentmembrane
G0017004biological_processcytochrome complex assembly
G0031676cellular_componentplasma membrane-derived thylakoid membrane
G0042651cellular_componentthylakoid membrane
G0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
H0009055molecular_functionelectron transfer activity
H0009512cellular_componentcytochrome b6f complex
H0009579cellular_componentthylakoid
H0015979biological_processphotosynthesis
H0016020cellular_componentmembrane
H0017004biological_processcytochrome complex assembly
H0031676cellular_componentplasma membrane-derived thylakoid membrane
H0042651cellular_componentthylakoid membrane
H0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CD A 216
ChainResidue
AGLU75
CHIS143
CHOH302

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEM A 301
ChainResidue
AHIS86
AARG87
APHE131
AGLY132
AGLY135
ATYR136
ALEU138
APRO139
AHIS187
APHE189
AGLN47
APHE48
AGLY51
APHE52
AMET54
AARG83

site_idAC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEM A 302
ChainResidue
ATYR34
AGLY37
AGLY38
ATHR40
AMET97
AHIS100
AVAL101
AARG103
AVAL104
AGLY109
AARG114
ATHR117
ATRP118
AGLY121
AVAL122
ALEU124
AHIS202
APHE203
AILE206
AILE211
ASER212
AHEM303
AHOH1106

site_idAC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEM A 303
ChainResidue
ATYR34
ACYS35
AGLY38
ALEU41
APHE203
AILE206
AARG207
AGLY210
AILE211
AHEM302
AHOH1106
BASN25
BPHE40
BVAL43
BILE44
BTDS1202

site_idAC5
Number of Residues12
DetailsBINDING SITE FOR RESIDUE OPC A 1002
ChainResidue
AMET92
BCYS50
CPRO37
CGLN38
EALA5
FTYR7
GLEU5
GLEU9
GBCR101
HTRP8
HLEU12
HPHE15

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE UMQ A 1101
ChainResidue
AMET73
AASN74
AVAL76
ASER77
APHE78
ATRP80
AHOH1105
BVAL52
CASP251
CARG254
CTRP257
CPHE261
DALA34

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE UMQ A 1102
ChainResidue
ALEU12
ALEU17
AASP20

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE UMQ A 1103
ChainResidue
AASP6
AGLN15
AUMQ1104

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE UMQ A 1104
ChainResidue
AVAL21
ATHR22
AUMQ1103
BTRP32
DSQD201

site_idBC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE CLA B 201
ChainResidue
BILE87
BVAL104
BLEU106
BLEU108
BILE132
BPHE133
BGLY136
BTHR140
BHOH211
BOPC1001
AILE98
ATYR105
BTYR80
BPRO83
BVAL84

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE OPC B 1001
ChainResidue
ATYR105
BLEU100
BGLU115
BASN118
BARG126
BPRO127
BVAL128
BALA129
BCLA201

site_idBC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE TDS B 1201
ChainResidue
ATYR136
AVAL143
AALA147
AILE150
APRO155
BILE75
BLEU76
BPRO77
BLEU81
BPHE85
BLEU88
DCYS128
DHIS129

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE TDS B 1202
ChainResidue
AARG207
AHEM303
BLEU36
BPHE40
DPHE24

site_idBC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEM C 301
ChainResidue
CTYR1
CPRO2
CTRP4
CCYS22
CCYS25
CHIS26
CGLN60
CLEU70
CASN71
CVAL72
CGLY73
CALA74
CASN154
CGLY156
CARG157
CGLY158
CILE160
CTYR161

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FES D 200
ChainResidue
DCYS108
DHIS110
DLEU111
DGLY112
DCYS126
DCYS128
DHIS129
DGLY130
DSER131

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SQD D 201
ChainResidue
AUMQ1104
BTRP32
BPRO33
CLYS275
CVAL279
DARG16
DASN20
DLEU21
DGLY25

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BCR G 101
ChainResidue
AILE39
AOPC1002
FILE16
FTRP20
GALA16
GGLY19
GGLY20
HPHE15

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsTRANSMEM: Helical => ECO:0000255|HAMAP-Rule:MF_00395, ECO:0000305|PubMed:14526088
ChainResidueDetails
HILE3-VAL23
CLEU70
AARG207-LEU215

site_idSWS_FT_FI2
Number of Residues22
DetailsTRANSMEM: Helical => ECO:0000305|PubMed:14526088
ChainResidueDetails
DLEU21-ILE43
CGLY69
BTHR131-LEU151
AALA186-ILE206

site_idSWS_FT_FI3
Number of Residues135
DetailsTOPO_DOM: Lumenal, thylakoid => ECO:0000305|PubMed:14526088
ChainResidueDetails
DPRO44-VAL179
BASP152-PHE160

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14526088
ChainResidueDetails
DCYS108
DHIS110
DCYS126
DHIS129

site_idSWS_FT_FI5
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:14526088, ECO:0000269|PubMed:16371475, ECO:0007744|PDB:1VF5, ECO:0007744|PDB:2D2C
ChainResidueDetails
AARG83

site_idSWS_FT_FI6
Number of Residues4
DetailsBINDING: axial binding residue => ECO:0000269|PubMed:14526088, ECO:0000269|PubMed:16371475, ECO:0007744|PDB:1VF5, ECO:0007744|PDB:2D2C
ChainResidueDetails
AHIS86
AHIS100
AHIS187
AHIS202

site_idSWS_FT_FI7
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:14526088, ECO:0007744|PDB:1VF5
ChainResidueDetails
AARG103
ALYS208

227111

PDB entries from 2024-11-06

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