2DVN
Structure of PH1917 protein with the complex of IMP from Pyrococcus horikoshii
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0009117 | biological_process | nucleotide metabolic process |
A | 0009143 | biological_process | nucleoside triphosphate catabolic process |
A | 0009146 | biological_process | purine nucleoside triphosphate catabolic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0017111 | molecular_function | ribonucleoside triphosphate phosphatase activity |
A | 0035870 | molecular_function | dITP diphosphatase activity |
A | 0036220 | molecular_function | ITP diphosphatase activity |
A | 0036222 | molecular_function | XTP diphosphatase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0047429 | molecular_function | nucleoside triphosphate diphosphatase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0009117 | biological_process | nucleotide metabolic process |
B | 0009143 | biological_process | nucleoside triphosphate catabolic process |
B | 0009146 | biological_process | purine nucleoside triphosphate catabolic process |
B | 0016787 | molecular_function | hydrolase activity |
B | 0017111 | molecular_function | ribonucleoside triphosphate phosphatase activity |
B | 0035870 | molecular_function | dITP diphosphatase activity |
B | 0036220 | molecular_function | ITP diphosphatase activity |
B | 0036222 | molecular_function | XTP diphosphatase activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0047429 | molecular_function | nucleoside triphosphate diphosphatase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 A 1202 |
Chain | Residue |
A | SER82 |
A | ARG86 |
A | IMP1301 |
A | HOH1471 |
A | HOH1498 |
A | HOH1564 |
A | HOH1573 |
A | HOH1578 |
site_id | AC2 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE SO4 A 1203 |
Chain | Residue |
A | SER8 |
A | ASN9 |
A | LYS12 |
A | TYR34 |
A | GLU36 |
A | GLU64 |
A | IMP1301 |
A | HOH1436 |
A | HOH1458 |
A | HOH1471 |
A | HOH1486 |
A | HOH1573 |
A | HOH1643 |
A | THR7 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 1204 |
Chain | Residue |
A | LYS41 |
A | TYR106 |
A | LYS108 |
A | LYS118 |
A | HOH1447 |
A | HOH1570 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 1207 |
Chain | Residue |
A | TYR85 |
A | PHE140 |
A | GLY141 |
A | HOH1506 |
A | HOH1545 |
A | HOH1639 |
site_id | AC5 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 A 1208 |
Chain | Residue |
A | ARG14 |
A | HIS138 |
A | THR159 |
A | ILE160 |
A | GOL1431 |
A | HOH1444 |
A | HOH1589 |
B | TRP179 |
B | ASN183 |
B | HOH1445 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 1211 |
Chain | Residue |
A | GLY89 |
A | LEU90 |
A | GLU91 |
A | LYS134 |
A | HOH1534 |
A | HOH1624 |
A | HOH1664 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 1212 |
Chain | Residue |
A | ARG129 |
A | SER131 |
A | ASN132 |
A | ARG135 |
A | HOH1500 |
A | HOH1552 |
A | HOH1641 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 1213 |
Chain | Residue |
A | ASN164 |
A | LYS174 |
A | HOH1445 |
A | HOH1528 |
A | HOH1652 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 1214 |
Chain | Residue |
A | HIS32 |
A | TRP52 |
A | LYS56 |
A | HOH1659 |
site_id | BC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B 1205 |
Chain | Residue |
B | GLY89 |
B | LEU90 |
B | GLU91 |
B | LYS134 |
B | HOH1506 |
B | HOH1507 |
B | HOH1519 |
B | HOH1594 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B 1206 |
Chain | Residue |
B | SER72 |
B | GLY99 |
B | ALA100 |
B | GLU101 |
B | ASP102 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 1209 |
Chain | Residue |
B | TYR85 |
B | PHE140 |
B | GLY141 |
B | HOH1501 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 1210 |
Chain | Residue |
B | SER151 |
B | GLU152 |
B | LYS153 |
B | HOH1615 |
site_id | BC5 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE IMP A 1301 |
Chain | Residue |
A | ASP143 |
A | LYS163 |
A | HIS168 |
A | ARG169 |
A | SO41202 |
A | SO41203 |
A | HOH1438 |
A | HOH1458 |
A | HOH1493 |
A | HOH1498 |
A | HOH1564 |
A | LYS12 |
A | GLU36 |
A | GLU64 |
A | ASP65 |
A | SER66 |
A | SER81 |
A | SER82 |
A | PHE107 |
A | PHE140 |
A | GLY141 |
A | TYR142 |
site_id | BC6 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE IMP B 1302 |
Chain | Residue |
B | LYS12 |
B | GLU64 |
B | ASP65 |
B | SER66 |
B | SER81 |
B | SER82 |
B | PHE107 |
B | PHE140 |
B | TYR142 |
B | ASP143 |
B | LYS163 |
B | HIS168 |
B | ARG169 |
B | HOH1511 |
B | HOH1586 |
B | HOH1593 |
site_id | BC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 1431 |
Chain | Residue |
A | HIS138 |
A | GLY139 |
A | SO41208 |
A | HOH1451 |
A | HOH1469 |
A | HOH1557 |
B | GLU178 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 1432 |
Chain | Residue |
B | THR7 |
B | SER8 |
B | ASN9 |
B | LYS12 |
B | GLU36 |
B | HOH1440 |
B | HOH1516 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 1433 |
Chain | Residue |
A | VAL125 |
A | LYS171 |
A | LYS181 |
A | HOH1565 |
A | HOH1672 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01405 |
Chain | Residue | Details |
A | ASP65 | |
B | ASP65 |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:18062990, ECO:0000269|Ref.2, ECO:0007744|PDB:2DVO, ECO:0007744|PDB:2E5X |
Chain | Residue | Details |
A | THR7 | |
B | HIS168 | |
A | SER66 | |
A | PHE140 | |
A | LYS163 | |
A | HIS168 | |
B | THR7 | |
B | SER66 | |
B | PHE140 | |
B | LYS163 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000305|PubMed:18062990, ECO:0007744|PDB:2ZTI |
Chain | Residue | Details |
A | GLU36 | |
A | ASP65 | |
B | GLU36 | |
B | ASP65 |