2DV6
Crystal structure of nitrite reductase from Hyphomicrobium denitrificans
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005507 | molecular_function | copper ion binding |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050421 | molecular_function | nitrite reductase (NO-forming) activity |
| B | 0005507 | molecular_function | copper ion binding |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050421 | molecular_function | nitrite reductase (NO-forming) activity |
| C | 0005507 | molecular_function | copper ion binding |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0050421 | molecular_function | nitrite reductase (NO-forming) activity |
| D | 0005507 | molecular_function | copper ion binding |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0050421 | molecular_function | nitrite reductase (NO-forming) activity |
| E | 0005507 | molecular_function | copper ion binding |
| E | 0016491 | molecular_function | oxidoreductase activity |
| E | 0042802 | molecular_function | identical protein binding |
| E | 0046872 | molecular_function | metal ion binding |
| E | 0050421 | molecular_function | nitrite reductase (NO-forming) activity |
| F | 0005507 | molecular_function | copper ion binding |
| F | 0016491 | molecular_function | oxidoreductase activity |
| F | 0042802 | molecular_function | identical protein binding |
| F | 0046872 | molecular_function | metal ion binding |
| F | 0050421 | molecular_function | nitrite reductase (NO-forming) activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU A 500 |
| Chain | Residue |
| A | HIS219 |
| A | CYS260 |
| A | HIS268 |
| A | MET273 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU A 501 |
| Chain | Residue |
| A | ASP222 |
| A | HIS224 |
| A | HIS259 |
| A | HOH2521 |
| C | HIS416 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU A 502 |
| Chain | Residue |
| A | GLN76 |
| A | HIS77 |
| A | CYS114 |
| A | HIS119 |
| A | MET124 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K A 2503 |
| Chain | Residue |
| A | GLU369 |
| A | LYS404 |
| A | ASP406 |
| A | HOH2555 |
| A | HOH2607 |
| B | HOH3563 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU B 500 |
| Chain | Residue |
| B | HIS219 |
| B | CYS260 |
| B | HIS268 |
| B | MET273 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU B 501 |
| Chain | Residue |
| A | HIS416 |
| B | HIS224 |
| B | HIS259 |
| B | HOH3658 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU B 502 |
| Chain | Residue |
| B | GLN76 |
| B | HIS77 |
| B | CYS114 |
| B | HIS119 |
| B | MET124 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K B 3503 |
| Chain | Residue |
| B | GLU369 |
| B | LYS404 |
| B | ASP406 |
| B | HOH3530 |
| B | HOH3640 |
| C | HOH4538 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU C 500 |
| Chain | Residue |
| C | HIS219 |
| C | CYS260 |
| C | HIS268 |
| C | MET273 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CU C 501 |
| Chain | Residue |
| B | HIS416 |
| C | HIS224 |
| C | HIS259 |
| site_id | BC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU C 502 |
| Chain | Residue |
| C | GLN76 |
| C | HIS77 |
| C | CYS114 |
| C | HIS119 |
| C | MET124 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K C 4503 |
| Chain | Residue |
| A | HOH2549 |
| C | GLU369 |
| C | LYS404 |
| C | ASP406 |
| C | HOH4515 |
| C | HOH4565 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU D 500 |
| Chain | Residue |
| D | HIS219 |
| D | CYS260 |
| D | HIS268 |
| D | MET273 |
| site_id | BC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU D 501 |
| Chain | Residue |
| D | ASP222 |
| D | HIS224 |
| D | HIS259 |
| D | HOH5633 |
| F | HIS416 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU D 502 |
| Chain | Residue |
| D | GLN76 |
| D | HIS77 |
| D | CYS114 |
| D | HIS119 |
| D | MET124 |
| site_id | BC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K D 5503 |
| Chain | Residue |
| D | GLU369 |
| D | LYS404 |
| D | ASP406 |
| D | HOH5557 |
| D | HOH5667 |
| E | HOH6532 |
| site_id | BC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU E 500 |
| Chain | Residue |
| E | HIS219 |
| E | CYS260 |
| E | HIS268 |
| E | MET273 |
| site_id | BC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU E 501 |
| Chain | Residue |
| D | HIS416 |
| E | HIS224 |
| E | HIS259 |
| E | HOH6643 |
| site_id | CC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU E 502 |
| Chain | Residue |
| E | GLN76 |
| E | HIS77 |
| E | CYS114 |
| E | HIS119 |
| E | MET124 |
| site_id | CC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K E 6503 |
| Chain | Residue |
| E | GLU369 |
| E | LYS404 |
| E | ASP406 |
| E | HOH6523 |
| E | HOH6642 |
| F | HOH7569 |
| site_id | CC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CU F 500 |
| Chain | Residue |
| F | MET273 |
| F | HIS219 |
| F | CYS260 |
| F | HIS268 |
| site_id | CC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU F 501 |
| Chain | Residue |
| E | HIS416 |
| F | ASP222 |
| F | HIS224 |
| F | HIS259 |
| F | HOH7701 |
| site_id | CC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CU F 502 |
| Chain | Residue |
| F | GLN76 |
| F | HIS77 |
| F | CYS114 |
| F | HIS119 |
| F | MET124 |
| site_id | CC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE K F 7503 |
| Chain | Residue |
| D | HOH5654 |
| F | GLU369 |
| F | LYS404 |
| F | ASP406 |
| F | HOH7566 |
| F | HOH7639 |
Functional Information from PROSITE/UniProt
| site_id | PS00079 |
| Number of Residues | 21 |
| Details | MULTICOPPER_OXIDASE1 Multicopper oxidases signature 1. GeFnYyCsIAghRqAGMegnI |
| Chain | Residue | Details |
| A | GLY108-ILE128 |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| F | PHE188 | |
| F | GLY190 |
| site_id | CSA10 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| D | ASP222 | |
| D | HIS365 |
| site_id | CSA11 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| E | ASP222 | |
| E | HIS365 |
| site_id | CSA12 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| F | ASP222 | |
| F | HIS365 |
| site_id | CSA2 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| A | PHE188 | |
| A | GLY190 |
| site_id | CSA3 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| D | PHE188 | |
| D | GLY190 |
| site_id | CSA4 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| C | PHE188 | |
| C | GLY190 |
| site_id | CSA5 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| E | PHE188 | |
| E | GLY190 |
| site_id | CSA6 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| B | PHE188 | |
| B | GLY190 |
| site_id | CSA7 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| A | ASP222 | |
| A | HIS365 |
| site_id | CSA8 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| B | ASP222 | |
| B | HIS365 |
| site_id | CSA9 |
| Number of Residues | 2 |
| Details | Annotated By Reference To The Literature 1nid |
| Chain | Residue | Details |
| C | ASP222 | |
| C | HIS365 |
