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2DKF

Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-beta-lactamase Superfamily

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0003723molecular_functionRNA binding
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
C0003723molecular_functionRNA binding
C0004518molecular_functionnuclease activity
C0004519molecular_functionendonuclease activity
C0004521molecular_functionRNA endonuclease activity
C0005737cellular_componentcytoplasm
C0006364biological_processrRNA processing
C0016787molecular_functionhydrolase activity
C0046872molecular_functionmetal ion binding
D0003723molecular_functionRNA binding
D0004518molecular_functionnuclease activity
D0004519molecular_functionendonuclease activity
D0004521molecular_functionRNA endonuclease activity
D0005737cellular_componentcytoplasm
D0006364biological_processrRNA processing
D0016787molecular_functionhydrolase activity
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 432
ChainResidue
AASP63
AHIS64
AASP162
AHIS400
AZN433

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 433
ChainResidue
AZN432
AHIS59
AHIS61
AHIS141
AASP162

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 432
ChainResidue
BASP63
BHIS64
BASP162
BHIS400
BZN433

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 433
ChainResidue
BHIS59
BHIS61
BHIS141
BASP162
BZN432

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 432
ChainResidue
CHIS59
CHIS61
CHIS141
CASP162
CZN433

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 433
ChainResidue
CASP63
CHIS64
CASP162
CHIS400
CZN432

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN D 432
ChainResidue
DASP63
DHIS64
DASP162
DHIS400
DZN433

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN D 433
ChainResidue
DHIS59
DHIS61
DHIS141
DASP162
DZN432

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues28
DetailsBINDING:
ChainResidueDetails
AHIS59
BASP63
BHIS64
BHIS141
BASP162
BHIS400
CHIS59
CHIS61
CASP63
CHIS64
CHIS141
AHIS61
CASP162
CHIS400
DHIS59
DHIS61
DASP63
DHIS64
DHIS141
DASP162
DHIS400
AASP63
AHIS64
AHIS141
AASP162
AHIS400
BHIS59
BHIS61

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qh5
ChainResidueDetails
AASP63

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qh5
ChainResidueDetails
BASP63

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qh5
ChainResidueDetails
CASP63

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qh5
ChainResidueDetails
DASP63

237735

PDB entries from 2025-06-18

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