Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2DCN

Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate (alpha-furanose form)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0005524	molecular_function	ATP binding
A	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
A	0016301	molecular_function	kinase activity
A	0016740	molecular_function	transferase activity
A	0046835	biological_process	carbohydrate phosphorylation
B	0000166	molecular_function	nucleotide binding
B	0005524	molecular_function	ATP binding
B	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
B	0016301	molecular_function	kinase activity
B	0016740	molecular_function	transferase activity
B	0046835	biological_process	carbohydrate phosphorylation
C	0000166	molecular_function	nucleotide binding
C	0005524	molecular_function	ATP binding
C	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
C	0016301	molecular_function	kinase activity
C	0016740	molecular_function	transferase activity
C	0046835	biological_process	carbohydrate phosphorylation
D	0000166	molecular_function	nucleotide binding
D	0005524	molecular_function	ATP binding
D	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
D	0016301	molecular_function	kinase activity
D	0016740	molecular_function	transferase activity
D	0046835	biological_process	carbohydrate phosphorylation
E	0000166	molecular_function	nucleotide binding
E	0005524	molecular_function	ATP binding
E	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
E	0016301	molecular_function	kinase activity
E	0016740	molecular_function	transferase activity
E	0046835	biological_process	carbohydrate phosphorylation
F	0000166	molecular_function	nucleotide binding
F	0005524	molecular_function	ATP binding
F	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
F	0016301	molecular_function	kinase activity
F	0016740	molecular_function	transferase activity
F	0046835	biological_process	carbohydrate phosphorylation
G	0000166	molecular_function	nucleotide binding
G	0005524	molecular_function	ATP binding
G	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
G	0016301	molecular_function	kinase activity
G	0016740	molecular_function	transferase activity
G	0046835	biological_process	carbohydrate phosphorylation
H	0000166	molecular_function	nucleotide binding
H	0005524	molecular_function	ATP binding
H	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
H	0016301	molecular_function	kinase activity
H	0016740	molecular_function	transferase activity
H	0046835	biological_process	carbohydrate phosphorylation
I	0000166	molecular_function	nucleotide binding
I	0005524	molecular_function	ATP binding
I	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
I	0016301	molecular_function	kinase activity
I	0016740	molecular_function	transferase activity
I	0046835	biological_process	carbohydrate phosphorylation
J	0000166	molecular_function	nucleotide binding
J	0005524	molecular_function	ATP binding
J	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
J	0016301	molecular_function	kinase activity
J	0016740	molecular_function	transferase activity
J	0046835	biological_process	carbohydrate phosphorylation
K	0000166	molecular_function	nucleotide binding
K	0005524	molecular_function	ATP binding
K	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
K	0016301	molecular_function	kinase activity
K	0016740	molecular_function	transferase activity
K	0046835	biological_process	carbohydrate phosphorylation
L	0000166	molecular_function	nucleotide binding
L	0005524	molecular_function	ATP binding
L	0008673	molecular_function	2-dehydro-3-deoxygluconokinase activity
L	0016301	molecular_function	kinase activity
L	0016740	molecular_function	transferase activity
L	0046835	biological_process	carbohydrate phosphorylation

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	Active site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"Q97U29","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	156
Details	Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000305","citation":{"citationType":"submission","publicationDate":"JAN-2006","submissionDatabase":"PDB data bank","title":"Crystal structure of 2-keto-3-deoxygluconate kinase from Sulfolobus tokodaii complexed with 2-keto-6-phosphogluconate.","authors":["Okazaki S.","Onda H.","Suzuki A.","Kuramitsu S.","Masui R.","Yamane T."]}}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	60
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"Q97U29","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

Catalytic Information from CSA

site_id	CSA1
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
A	ALA254
A	GLY255
A	GLY253
A	ASP256

site_id	CSA10
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
J	ALA254
J	GLY255
J	GLY253
J	ASP256

site_id	CSA11
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
K	ALA254
K	GLY255
K	GLY253
K	ASP256

site_id	CSA12
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
L	ALA254
L	GLY255
L	GLY253
L	ASP256

site_id	CSA13
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
A	LYS224
A	GLY253

site_id	CSA14
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
B	LYS224
B	GLY253

site_id	CSA15
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
C	LYS224
C	GLY253

site_id	CSA16
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
D	LYS224
D	GLY253

site_id	CSA17
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
E	LYS224
E	GLY253

site_id	CSA18
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
F	LYS224
F	GLY253

site_id	CSA19
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
G	LYS224
G	GLY253

site_id	CSA2
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
B	ALA254
B	GLY255
B	GLY253
B	ASP256

site_id	CSA20
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
H	LYS224
H	GLY253

site_id	CSA21
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
I	LYS224
I	GLY253

site_id	CSA22
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
J	LYS224
J	GLY253

site_id	CSA23
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
K	LYS224
K	GLY253

site_id	CSA24
Number of Residues	2
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
L	LYS224
L	GLY253

site_id	CSA3
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
C	ALA254
C	GLY255
C	GLY253
C	ASP256

site_id	CSA4
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
D	ALA254
D	GLY255
D	GLY253
D	ASP256

site_id	CSA5
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
E	ALA254
E	GLY255
E	GLY253
E	ASP256

site_id	CSA6
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
F	ALA254
F	GLY255
F	GLY253
F	ASP256

site_id	CSA7
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
G	ALA254
G	GLY255
G	GLY253
G	ASP256

site_id	CSA8
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
H	ALA254
H	GLY255
H	GLY253
H	ASP256

site_id	CSA9
Number of Residues	4
Details	Annotated By Reference To The Literature 1rk2

Chain	Residue	Details
I	ALA254
I	GLY255
I	GLY253
I	ASP256

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)