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2CZF

Crystal structure of orotidine 5'-phosphate decarboxylase from Pyrococcus horikoshii OT3 complexed with XMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016829molecular_functionlyase activity
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE XMP A 209
ChainResidue
AALA5
BILE63
AASP7
ALYS29
ALYS59
ASER109
APRO162
AGLY185
AARG186
AHOH255

site_idAC2
Number of Residues21
DetailsBINDING SITE FOR RESIDUE XMP B 209
ChainResidue
AILE63
AHOH233
BALA5
BASP7
BLYS29
BASP57
BSER109
BHIS110
BPRO162
BILE164
BGLN167
BVAL184
BGLY185
BARG186
BHOH214
BHOH219
BHOH220
BHOH247
BHOH253
BHOH269
BHOH286

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDlKlaDIPnTN
ChainResidueDetails
AILE54-ASN67

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS59
BLYS59

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP7
BASP57
BSER109
BPRO162
BGLY185
BARG186
ALYS29
AASP57
ASER109
APRO162
AGLY185
AARG186
BASP7
BLYS29

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
AASP57
ALYS59

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BASP57
BLYS59

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
AASP62
ALYS59
AASP57
ALYS29

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1dbt
ChainResidueDetails
BASP62
BLYS59
BASP57
BLYS29

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PDB entries from 2025-06-18

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