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2CYB

Crystal structure of Tyrosyl-tRNA Synthetase complexed with L-tyrosine from Archaeoglobus fulgidus

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004831molecular_functiontyrosine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006437biological_processtyrosyl-tRNA aminoacylation
B0000166molecular_functionnucleotide binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004831molecular_functiontyrosine-tRNA ligase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006412biological_processtranslation
B0006418biological_processtRNA aminoacylation for protein translation
B0006437biological_processtyrosyl-tRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TYR B 401
ChainResidue
ATYR36
BHOH530
BHOH612
BHOH626
AGLY38
ALEU69
AHIS74
AVAL144
ATYR158
AGLN162
AASP165
AGLN180

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE TYR B 501
ChainResidue
BTYR36
BGLY38
BLEU69
BALA71
BHIS74
BVAL144
BTYR158
BGLN162
BASP165
BGLN180
BHOH522
BHOH560
BHOH634
BHOH640

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues10
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. P..SGeIHLGHM
ChainResidueDetails
APRO41-MET50

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02008, ECO:0000269|PubMed:16325203
ChainResidueDetails
ATYR36
BGLN180
ATYR158
AGLN162
AASP165
AGLN180
BTYR36
BTYR158
BGLN162
BASP165

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02008
ChainResidueDetails
ASER217
BSER217

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1d2r
ChainResidueDetails
ALYS214
ASER217

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1d2r
ChainResidueDetails
BLYS214
BSER217

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PDB entries from 2024-07-17

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