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2CBN

Crystal structure of ZipD from Escherichia coli

Functional Information from GO Data
ChainGOidnamespacecontents
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0004527molecular_functionexonuclease activity
A0004532molecular_functionRNA exonuclease activity
A0008033biological_processtRNA processing
A0008270molecular_functionzinc ion binding
A0016787molecular_functionhydrolase activity
A0016891molecular_functionRNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism
A0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
A0042780biological_processtRNA 3'-end processing
A0042781molecular_function3'-tRNA processing endoribonuclease activity
A0042802molecular_functionidentical protein binding
A0042803molecular_functionprotein homodimerization activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
AHIS64
AHIS66
AHIS141
AASP212
AZN402

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 402
ChainResidue
AZN401
AASP68
AHIS69
AASP212
AHIS270

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01818
ChainResidueDetails
AASP68

site_idSWS_FT_FI2
Number of Residues7
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01818, ECO:0000269|PubMed:16452444
ChainResidueDetails
AHIS64
AHIS66
AASP68
AHIS69
AHIS141
AASP212
AHIS270

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PDB entries from 2025-06-25

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