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2C9Y

Structure of human adenylate kinase 2

Functional Information from GO Data
ChainGOidnamespacecontents
A0004017molecular_functionadenylate kinase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005758cellular_componentmitochondrial intermembrane space
A0006139biological_processnucleobase-containing compound metabolic process
A0006172biological_processADP biosynthetic process
A0009117biological_processnucleotide metabolic process
A0009123biological_processnucleoside monophosphate metabolic process
A0015949biological_processnucleobase-containing small molecule interconversion
A0016301molecular_functionkinase activity
A0016776molecular_functionphosphotransferase activity, phosphate group as acceptor
A0019205molecular_functionnucleobase-containing compound kinase activity
A0036126cellular_componentsperm flagellum
A0046033biological_processAMP metabolic process
A0046034biological_processATP metabolic process
A0046940biological_processnucleoside monophosphate phosphorylation
A0070062cellular_componentextracellular exosome
A0097226cellular_componentsperm mitochondrial sheath
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE B4P A1233
ChainResidue
APRO24
APHE156
ALYS160
AARG175
AGLN214
ATHR215
APRO216
AHOH2006
AHOH2146
AHOH2148
AHOH2149
AGLY25
AHOH2150
AALA26
AGLY27
AGLY29
ATHR30
AARG138
AARG150
ASER151

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A1234
ChainResidue
ALEU87
AGLU88
ATHR89
ALYS93
AARG118
ALYS203
AARG204
AHOH2079

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A1235
ChainResidue
AASN38
AASP69
AGLY71
AARG174
APHE220
AHOH2013
AHOH2151

Functional Information from PROSITE/UniProt
site_idPS00113
Number of Residues12
DetailsADENYLATE_KINASE Adenylate kinase signature. FLLDGFPRtvrQ
ChainResidueDetails
APHE96-GLN107

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03168, ECO:0000269|Ref.17
ChainResidueDetails
AGLY25
ASER151
AARG175
AGLN214

site_idSWS_FT_FI2
Number of Residues7
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03168
ChainResidueDetails
ATHR46
AARG51
ALYS72
AGLY100
AGLN107
AARG142
AARG186

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|Ref.17
ChainResidueDetails
AARG138

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22814378, ECO:0007744|PubMed:25944712
ChainResidueDetails
AMET1

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER4
ASER58

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:Q9WTP6
ChainResidueDetails
ALYS62
ALYS93

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569
ChainResidueDetails
ASER133

site_idSWS_FT_FI8
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9WTP6
ChainResidueDetails
ALYS181

site_idSWS_FT_FI9
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ATHR195

Catalytic Information from CSA
site_idCSA1
Number of Residues6
DetailsAnnotated By Reference To The Literature 1zio
ChainResidueDetails
AARG175
AARG142
ALYS28
AARG186
AASP177
AASP178

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1zio
ChainResidueDetails
AARG142
ALYS28
AASP48
AASP166

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PDB entries from 2024-07-24

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