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2C8V

Insights into the role of nucleotide-dependent conformational change in nitrogenase catalysis: Structural characterization of the nitrogenase Fe protein Leu127 deletion variant with bound MgATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0009399biological_processnitrogen fixation
A0016163molecular_functionnitrogenase activity
A0016491molecular_functionoxidoreductase activity
A0018697molecular_functioncarbonyl sulfide nitrogenase activity
A0046872molecular_functionmetal ion binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 293
ChainResidue
ASER16
AHOH2004
AHOH2014
AHOH2099
AATP5292

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FES A 290
ChainResidue
ACYS97
AFES291

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FES A 291
ChainResidue
AHOH2036
ACYS132
AFES290

site_idAC4
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ATP A 5292
ChainResidue
ALYS10
AGLY11
AGLY12
AILE13
AGLY14
ALYS15
ASER16
ATHR17
AASP39
ALYS41
AASN185
APRO212
AARG213
AASP214
AVAL217
AGLN218
AGLU221
AGLN236
ATYR240
AMG293
AHOH2004
AHOH2082
AHOH2097
AHOH2099

Functional Information from PROSITE/UniProt
site_idPS00746
Number of Residues13
DetailsNIFH_FRXC_1 NifH/frxC family signature 1. EsGGPepGvGCAG
ChainResidueDetails
AGLU87-GLY99

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING:
ChainResidueDetails
ACYS97
AGLY133
AGLY9

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: ADP-ribosylarginine; by dinitrogenase reductase ADP-ribosyltransferase => ECO:0000250
ChainResidueDetails
AARG100

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
ALYS10electrostatic stabiliser, hydrogen bond donor
ALYS15electrostatic stabiliser, hydrogen bond donor
ALYS41electrostatic stabiliser, hydrogen bond donor
AVAL130hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

221051

PDB entries from 2024-06-12

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