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2C4N

NagD from E.coli K-12 strain

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005829cellular_componentcytosol
A0008253molecular_function5'-nucleotidase activity
A0016787molecular_functionhydrolase activity
A0016791molecular_functionphosphatase activity
A0046050biological_processUMP catabolic process
A0046872molecular_functionmetal ion binding
A0106411molecular_functionXMP 5'-nucleosidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A1251
ChainResidue
AASP9
AASP11
AASP201
APO41253
AHOH2093
AHOH2097

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A1252
ChainResidue
AASN202
ATHR205
APO41253
AHOH2097
AASN43
AASP146
ALYS176

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A1253
ChainResidue
AASP9
AASP11
ALEU41
ATHR42
AASN43
ATYR44
ALYS176
AMG1251
APO41252
AHOH2111

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000305|PubMed:16430214
ChainResidueDetails
AASP9

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:16430214
ChainResidueDetails
AASP11

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:16430214, ECO:0007744|PDB:2C4N
ChainResidueDetails
AASP9
AASP201

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP11
ATHR42
ALYS176
AASN202

site_idSWS_FT_FI5
Number of Residues1
DetailsSITE: Orients D-11 for proton transfer during catalytic turnover => ECO:0000305|PubMed:16430214
ChainResidueDetails
AARG55

site_idSWS_FT_FI6
Number of Residues1
DetailsSITE: Confers substrate specificity
ChainResidueDetails
AASP146

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1lvh
ChainResidueDetails
ATHR143
ALYS176

226707

PDB entries from 2024-10-30

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