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2C2D

Efficient and High Fidelity Incorporation of dCTP Opposite 7,8- Dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA Polymerase Dpo4

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0009432biological_processSOS response
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A2001
ChainResidue
AASP7
AASP105
AGLU106
ADTP1001
ADTP1002
ACA2002
AHOH2057

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A2002
ChainResidue
AASP105
ADTP1001
ACA2001
AASP7
APHE8

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CA A2003
ChainResidue
AALA181

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A2004
ChainResidue
ADTP1001
ADTP1002
ACA2005

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A2005
ChainResidue
ADTP1001
ADTP1002
ACA2004
AHOH2058

site_idAC6
Number of Residues19
DetailsBINDING SITE FOR RESIDUE DTP A1001
ChainResidue
AASP7
ATYR10
APHE11
ATYR12
AALA44
ATHR45
ATYR48
AARG51
AASP105
ALYS159
ADTP1002
ACA2001
ACA2002
ACA2004
ACA2005
AHOH2007
AHOH2057
T8OG5
TDG6

site_idAC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE DTP A1002
ChainResidue
AALA102
ASER103
AASP105
AGLU106
ALYS152
ADTP1001
ACA2001
ACA2004
ACA2005
AHOH2057
AHOH2059
PDC13
TDT9
TDC10

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
AGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12

218853

PDB entries from 2024-04-24

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