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2BT3

AGAO in complex with Ruthenium-C4-wire at 1.73 angstroms

Functional Information from GO Data
ChainGOidnamespacecontents
A0005507molecular_functioncopper ion binding
A0008131molecular_functionprimary amine oxidase activity
A0009308biological_processamine metabolic process
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
A0048038molecular_functionquinone binding
A0052595molecular_functionaliphatic amine oxidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU A1629
ChainResidue
AHIS431
AHIS433
AHIS592
AHOH2290
AHOH2328

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A1630
ChainResidue
AHOH2334
AASP440
AMET441
AASP581
AILE582

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 A1632
ChainResidue
AASP316
ACYS317
ALEU318
AHIS345
AGLY350
AARG367
AGOL1639
AHOH2292
AHOH2293
AHOH2496
AHOH2497

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A1633
ChainResidue
ATHR233
AGLY234
AHOH2498

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A1634
ChainResidue
AARG545
AHOH2456
AHOH2499

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE R4A A1631
ChainResidue
AGLU102
APHE105
AALA135
APRO136
ALEU137
ATRP168
ATYR296
ATYR302
AGLN306
ATYR307
AASN309
AARG336
ASER356
AASP357
ALEU358
ATHR378
AILE379
AGLY380
AASN381
ATPQ382
AHOH2289

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A1635
ChainResidue
AARG532
AARG533
ATHR554
APHE557
AHIS561
ASER562
AGLY563
AGLY564
AALA565
AHOH2436

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A1636
ChainResidue
AASN126
AASP161
AVAL197
AALA199
AHOH2500
AHOH2501
AHOH2502

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A1637
ChainResidue
AASP605
ALYS610
AHOH2468

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A1638
ChainResidue
ALEU209
ATHR210
ASER620
APRO621
AVAL622
ALEU623
AASP624
AHOH2504

site_idBC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A1639
ChainResidue
AGLU347
ATRP349
AARG370
ALYS401
ASO41632
AHOH2265
AHOH2267
AHOH2303
AHOH2497
AHOH2505
AHOH2506

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A1640
ChainResidue
AASN368
AASP393
ALYS610
AHOH2287
AHOH2476
AHOH2479
AHOH2507
AHOH2508

Functional Information from PROSITE/UniProt
site_idPS01164
Number of Residues14
DetailsCOPPER_AMINE_OXID_1 Copper amine oxidase topaquinone signature. MVIsfftTigNYDY
ChainResidueDetails
AMET371-TYR384

site_idPS01165
Number of Residues14
DetailsCOPPER_AMINE_OXID_2 Copper amine oxidase copper-binding site signature. TfGltHFprvEDwP
ChainResidueDetails
ATHR587-PRO600

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P12807
ChainResidueDetails
AASP298

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Schiff-base intermediate with substrate; via topaquinone => ECO:0000250|UniProtKB:P12807
ChainResidueDetails
ATPQ382

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P12807
ChainResidueDetails
ATYR296

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P46883
ChainResidueDetails
AILE379

site_idSWS_FT_FI5
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:9405045, ECO:0007744|PDB:1AV4, ECO:0007744|PDB:1AVL, ECO:0007744|PDB:1IU7, ECO:0007744|PDB:1IVU, ECO:0007744|PDB:1IVV, ECO:0007744|PDB:1IVW, ECO:0007744|PDB:1IVX, ECO:0007744|PDB:1RJO, ECO:0007744|PDB:1SIH, ECO:0007744|PDB:1SII, ECO:0007744|PDB:1UI8, ECO:0007744|PDB:1W4N, ECO:0007744|PDB:1W5Z, ECO:0007744|PDB:1W6C, ECO:0007744|PDB:1W6G, ECO:0007744|PDB:2BT3, ECO:0007744|PDB:2CFD, ECO:0007744|PDB:2CFG, ECO:0007744|PDB:2CFK, ECO:0007744|PDB:2CFL, ECO:0007744|PDB:2CFW, ECO:0007744|PDB:2CG0, ECO:0007744|PDB:2CG1, ECO:0007744|PDB:2CWT, ECO:0007744|PDB:2CWU, ECO:0007744|PDB:2CWV, ECO:0007744|PDB:2D1W, ECO:0007744|PDB:2E2T, ECO:0007744|PDB:2E2U, ECO:0007744|PDB:2E2V, ECO:0007744|PDB:2YX9, ECO:0007744|PDB:2ZL8, ECO:0007744|PDB:3AMO, ECO:0007744|PDB:3KII, ECO:0007744|PDB:3KN4, ECO:0007744|PDB:3WA2, ECO:0007744|PDB:3WA3
ChainResidueDetails
AHIS431
AHIS433
AHIS592

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: 2',4',5'-topaquinone => ECO:0000269|PubMed:9405045
ChainResidueDetails
ATPQ382

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1oac
ChainResidueDetails
AASP298

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PDB entries from 2024-07-24

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