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2BMO

The Crystal Structure of Nitrobenzene Dioxygenase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0005515molecular_functionprotein binding
A0019439biological_processobsolete aromatic compound catabolic process
A0044237biological_processcellular metabolic process
A0046872molecular_functionmetal ion binding
A0051213molecular_functiondioxygenase activity
A0051537molecular_function2 iron, 2 sulfur cluster binding
B0005515molecular_functionprotein binding
B0006725biological_processobsolete cellular aromatic compound metabolic process
B0019380biological_process3-phenylpropionate catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE A1441
ChainResidue
AHIS206
AHIS211
AASP360
AEDO1442
AHOH2423

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NI B1195
ChainResidue
BHOH2056
BHOH2269
BHIS14
BGLU18
BGLU160
BHOH2055

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI B1196
ChainResidue
BHIS56
BEDO1197
BHOH2003
BHOH2015
BHOH2140

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FES A1440
ChainResidue
ACYS79
AHIS81
AARG82
ACYS99
ATYR101
AHIS102
ATRP104

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A1442
ChainResidue
AASN199
APHE200
AASP203
AHIS206
AASN295
AASP360
AFE1441
AHOH2423

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A1443
ChainResidue
ALYS54
AGLU90
APRO184
ALYS186
ATRP325
AEOH1445
AHOH2324
BGLU70
BARG183

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A1444
ChainResidue
ALYS30
AARG35
AASP151

site_idAC8
Number of Residues11
DetailsBINDING SITE FOR RESIDUE EDO B1197
ChainResidue
ATYR174
BMET2
BASN4
BGLU7
BHIS56
BNI1196
BHOH2003
BHOH2015
BHOH2140
BHOH2299
BHOH2300

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1198
ChainResidue
BTYR88
BGLN102
BLEU191
BVAL192
BPHE193
BHOH2301
BHOH2302

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B1199
ChainResidue
BTHR35
BTHR39
BVAL120
BASN122
BVAL123
BHOH2303
BHOH2304

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B1200
ChainResidue
BASP46
BARG115
BPHE116
BHOH2305
BHOH2306

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B1201
ChainResidue
APRO47
ASER48
AASP51
AHOH2060
BARG78
BTYR79
BGLN80
BHOH2307

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EOH A1445
ChainResidue
ALYS54
ALYS56
AGLU61
AGLU90
ALYS186
ATRP325
AEDO1443
BGLU149
BHOH2250

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH A1446
ChainResidue
ASER141
APHE142
AHIS143
AHOH2190
AHOH2424
BGLU17

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH A1447
ChainResidue
APRO398
AGLY399
AHOH2395
AASP163
ATYR392
AGLY393

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH A1448
ChainResidue
AHIS88
AALA89
AHOH2061
BASN111
BHOH2218

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A1449
ChainResidue
AARG288
AHOH2303
AHOH2426

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH B1202
ChainResidue
AVAL188
BGLN186
BTHR187
BHIS188

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH B1203
ChainResidue
BLEU71
BPRO112
BLYS113
BALA146
BARG147
BARG148

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH B1204
ChainResidue
BGLU17
BGLU18
BARG21
BHOH2308

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH B1205
ChainResidue
AASN93
BGLU76
BARG77
BARG78
BTYR79

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH B1206
ChainResidue
ATRP166
AARG286
AHOH2299
BASN4
BGLN6

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B1207
ChainResidue
BPRO60
BLYS164
BLYS172

site_idCC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH B1208
ChainResidue
BHIS14

Functional Information from PROSITE/UniProt
site_idPS00570
Number of Residues24
DetailsRING_HYDROXYL_ALPHA Bacterial ring hydroxylating dioxygenases alpha-subunit signature. CrHRGktlvhaeaGNakgfvCgYH
ChainResidueDetails
ACYS79-HIS102

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ndo
ChainResidueDetails
AHIS206
AASP203

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1ndo
ChainResidueDetails
AHIS102

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PDB entries from 2024-05-01

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