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2BIG

Radiation damage of the Schiff base in phosphoserine aminotransferase (structure I)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004648molecular_functionO-phospho-L-serine:2-oxoglutarate aminotransferase activity
A0005737cellular_componentcytoplasm
A0006563biological_processL-serine metabolic process
A0006564biological_processL-serine biosynthetic process
A0008483molecular_functiontransaminase activity
A0030170molecular_functionpyridoxal phosphate binding
B0004648molecular_functionO-phospho-L-serine:2-oxoglutarate aminotransferase activity
B0005737cellular_componentcytoplasm
B0006563biological_processL-serine metabolic process
B0006564biological_processL-serine biosynthetic process
B0008483molecular_functiontransaminase activity
B0030170molecular_functionpyridoxal phosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A1362
ChainResidue
AASP256
AHOH2285
AHOH2292
BGLU51
BHOH2099
BHOH2101

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A1363
ChainResidue
AHOH2410
BASP66
BHOH2124
AASP344
AHOH2406
AHOH2408

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A1364
ChainResidue
ASER101
ATRP102
AASN151
ATHR152
AILE153
AHOH2212

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A1365
ChainResidue
ATRP102
AILE153
AARG334
AHOH2017

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B1362
ChainResidue
AHOH2328
BHOH2158
BHOH2339
BHOH2341
BHOH2348
BHOH2353

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B1363
ChainResidue
BASP256
BHOH2310
BHOH2311
BHOH2313

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MG B1364
ChainResidue
BTYR127
BGLN128
BTYR154
BTHR156
BVAL286
BGLY287
BHIS288
BASN302
BHOH2363

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B1365
ChainResidue
BSER101
BTRP102
BASN151
BTHR152
BILE153

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B1366
ChainResidue
BTRP102
BILE153
BARG334
BHOH2021
BHOH2405

site_idBC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE PLP A1361
ChainResidue
AGLY75
AALA76
ASER77
ATRP102
ATHR152
AASP172
ASER174
AGLN195
ALYS196
AHOH2248
AHOH2430
AHOH2431
BASN237
BTHR238
BHOH2295

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE A1366
ChainResidue
ALEU98
AGLU104
AILE118
ALYS123
AHOH2432

site_idBC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PLP B1361
ChainResidue
AASN237
ATHR238
AHOH2277
BGLY75
BALA76
BSER77
BTRP102
BTHR152
BASP172
BSER174
BGLN195
BLYS196
BHOH2439
BHOH2440

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG A1367
ChainResidue
AGLN159
ALYS291
AGLY292
AARG294
ALEU296
AHOH2342
AHOH2433
AHOH2435

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG B1367
ChainResidue
BGLN159
BGLY292
BARG294
BLEU296
BHOH2374

Functional Information from PROSITE/UniProt
site_idPS00595
Number of Residues20
DetailsAA_TRANSFER_CLASS_5 Aminotransferases class-V pyridoxal-phosphate attachment site. FGMIyaGAQKnlgps.GvTvV
ChainResidueDetails
APHE187-VAL206

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AARG42
BARG42

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING:
ChainResidueDetails
AALA76
BASP172
BGLN195
BASN237
ATRP102
ATHR152
AASP172
AGLN195
AASN237
BALA76
BTRP102
BTHR152

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine
ChainResidueDetails
ALYS196
BLYS196

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1bjo
ChainResidueDetails
ATRP102
AASP172
ALYS196

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1bjo
ChainResidueDetails
BTRP102
BASP172
BLYS196

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PDB entries from 2024-05-01

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