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2BGM

X-Ray structure of ternary-Secoisolariciresinol Dehydrogenase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0009807biological_processlignan biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0051289biological_processprotein homotetramerization
A0102911molecular_function(-)-secoisolariciresinol dehydrogenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAJ A1300
ChainResidue
AGLY23
AASN99
AVAL100
AGLY101
ATHR151
AALA152
ASER153
ATYR167
ALYS171
APRO197
ATYR198
AGLY26
AILE199
AVAL200
AHOH2007
AHOH2123
AHOH2124
AMAX6001
AGLY27
AILE28
AASP47
AILE48
ACYS71
AASP72
AVAL73

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE MAX A6001
ChainResidue
ALEU103
ASER104
AILE154
AGLY162
AVAL163
ASER164
ATYR167
APRO197
ATYR198
AILE199
ANAJ1300
AHOH2067
AHOH2125
AHOH2126
AHOH2127

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. IssftagegvShvYTATKHAVlGLTtSLC
ChainResidueDetails
AILE154-CYS182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton donor/acceptor => ECO:0000269|PubMed:15653677, ECO:0000269|PubMed:16493463, ECO:0007744|PDB:2BGL, ECO:0007744|PDB:2BGM
ChainResidueDetails
ATYR167

site_idSWS_FT_FI2
Number of Residues7
DetailsBINDING: BINDING => ECO:0000269|PubMed:15653677, ECO:0007744|PDB:2BGL, ECO:0007744|PDB:2BGM
ChainResidueDetails
AGLY23
AASP47
AVAL73
AASN99
ASER104
ASER164
ALYS171

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0007744|PDB:2BGL, ECO:0007744|PDB:2BGM
ChainResidueDetails
AVAL200

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ATYR167
ALYS171
ASER153

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ATYR167
AASN125
ALYS171
ASER153

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ATYR167
ALYS171

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PDB entries from 2024-07-10

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