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2BDY

thrombin in complex with inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0005509molecular_functioncalcium ion binding
A0005576cellular_componentextracellular region
A0006508biological_processproteolysis
A0007596biological_processblood coagulation
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 402
ChainResidue
AARG263
ALYS266
AHOH435
AHOH436
AHOH442
AHOH454

site_idAC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE UNB A 401
ChainResidue
AGLU130
ALEU132
AILE209
AASP229
AALA230
ACYS231
ASER235
ASER256
ATRP257
AGLY258
AGLY260
ACYS261
AGLY268
AHOH734
AHOH735
AHOH736
AHOH742
AHIS79
ATYR83
ATRP86

site_idAC3
Number of Residues14
DetailsBINDING SITE FOR CHAIN B OF HIRUDIN IIIB'
ChainResidue
APHE55
AGLN60
ALEU62
ALEU96
AARG98
AARG104
ATHR105
AARG106
ATYR107
AGLU112
ALYS113
AILE114
AHOH441
AHOH465

Functional Information from PROSITE/UniProt
site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. LTAAHC
ChainResidueDetails
ALEU75-CYS80

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. DAceGDSGGPFV
ChainResidueDetails
AASP229-VAL240

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Sulfotyrosine => ECO:0000269|PubMed:17685615, ECO:0000269|PubMed:8251938
ChainResidueDetails
BTYS363
AASP135
ASER235

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Cleavage; by factor Xa => ECO:0000269|PubMed:34265300
ChainResidueDetails
AARG36

site_idSWS_FT_FI3
Number of Residues1
DetailsCARBOHYD: N-linked (GlcNAc...) (complex) asparagine => ECO:0000269|PubMed:16335952, ECO:0000269|PubMed:19139490, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19838169, ECO:0000269|PubMed:873923
ChainResidueDetails
AASN89

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
AASP135
AHIS79

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
AGLY236
ASER235

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
AGLY233
ASER235

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
AASP135
AHIS79
ASER235

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
AGLY236
AASP135
AHIS79
ASER235

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
AASP135
AHIS79
AGLY233
ASER235

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PDB entries from 2024-07-10

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