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2BCR

DNA polymerase lambda in complex with a DNA duplex containing an unpaired Damp

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 600
ChainResidue
AASP427
AASP429
APPV638
AHOH813
PDG7

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 602
ChainResidue
THOH54
THOH98
ASER463
AHOH945
AHOH946
THOH40

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 603
ChainResidue
ASER339
AILE341
AALA344
PDA5
PHOH45
PHOH251

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 604
ChainResidue
ACYS300
AILE302
AILE305
AHOH1105
DDC3
DHOH406

site_idAC5
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PPV A 638
ChainResidue
AARG386
AGLY416
ASER417
AARG420
AGLY426
AMG600
AHOH839
AHOH846
AHOH967
AHOH1041
PDG7
PHOH96

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 801
ChainResidue
AARG452
ALEU457
AASP460
AHOH1135

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 802
ChainResidue
AGLN471
AVAL494
AHIS530
AHOH856
AHOH950
AHOH981
TDA9

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO P 803
ChainResidue
ATHR348
AMET351
AGLU385
AARG485
PDG3

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 804
ChainResidue
AARG419
ATHR555
AGLU556
ALYS557
ATYR567
AHOH835
AHOH1000
AHOH1068

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 805
ChainResidue
ALYS347
AGLY481
APRO482
AGLY483
AARG484
AHOH896

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP
ChainResidueDetails
AGLY416-PRO435

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Schiff-base intermediate with DNA => ECO:0000269|PubMed:11457865
ChainResidueDetails
ALYS312

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
ChainResidueDetails
AARG386
ASER417
AGLY426
AASN513

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ
ChainResidueDetails
AASP427
AASP429
AASP490

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1jms
ChainResidueDetails
AASP490

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PDB entries from 2024-07-31

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