2B3J
Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0002100 | biological_process | tRNA wobble adenosine to inosine editing |
A | 0003824 | molecular_function | catalytic activity |
A | 0008033 | biological_process | tRNA processing |
A | 0008251 | molecular_function | tRNA-specific adenosine deaminase activity |
A | 0008270 | molecular_function | zinc ion binding |
A | 0016787 | molecular_function | hydrolase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0052717 | molecular_function | tRNA-specific adenosine-34 deaminase activity |
B | 0002100 | biological_process | tRNA wobble adenosine to inosine editing |
B | 0003824 | molecular_function | catalytic activity |
B | 0008033 | biological_process | tRNA processing |
B | 0008251 | molecular_function | tRNA-specific adenosine deaminase activity |
B | 0008270 | molecular_function | zinc ion binding |
B | 0016787 | molecular_function | hydrolase activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0052717 | molecular_function | tRNA-specific adenosine-34 deaminase activity |
C | 0002100 | biological_process | tRNA wobble adenosine to inosine editing |
C | 0003824 | molecular_function | catalytic activity |
C | 0008033 | biological_process | tRNA processing |
C | 0008251 | molecular_function | tRNA-specific adenosine deaminase activity |
C | 0008270 | molecular_function | zinc ion binding |
C | 0016787 | molecular_function | hydrolase activity |
C | 0046872 | molecular_function | metal ion binding |
C | 0052717 | molecular_function | tRNA-specific adenosine-34 deaminase activity |
D | 0002100 | biological_process | tRNA wobble adenosine to inosine editing |
D | 0003824 | molecular_function | catalytic activity |
D | 0008033 | biological_process | tRNA processing |
D | 0008251 | molecular_function | tRNA-specific adenosine deaminase activity |
D | 0008270 | molecular_function | zinc ion binding |
D | 0016787 | molecular_function | hydrolase activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0052717 | molecular_function | tRNA-specific adenosine-34 deaminase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 2001 |
Chain | Residue |
A | HIS53 |
A | CYS83 |
A | CYS86 |
A | HOH2002 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 1001 |
Chain | Residue |
B | PHE122 |
B | ASN123 |
A | CYS83 |
A | VAL84 |
A | GLY107 |
A | HOH2052 |
A | HOH2059 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ZN B 2002 |
Chain | Residue |
B | HIS53 |
B | GLU55 |
B | CYS83 |
B | CYS86 |
B | HOH2003 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 1002 |
Chain | Residue |
A | PHE122 |
A | ASN123 |
B | CYS83 |
B | VAL84 |
B | GLY107 |
B | HOH2041 |
B | HOH2042 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN C 2003 |
Chain | Residue |
C | HIS53 |
C | CYS83 |
C | CYS86 |
C | HOH2004 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 1004 |
Chain | Residue |
C | CYS83 |
C | VAL84 |
C | GLY107 |
C | HOH2060 |
D | PHE122 |
D | ASN123 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN D 2004 |
Chain | Residue |
D | HIS53 |
D | CYS83 |
D | CYS86 |
D | HOH2005 |
site_id | AC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL D 1003 |
Chain | Residue |
C | MET92 |
C | PHE122 |
C | ASN123 |
D | CYS83 |
D | VAL84 |
D | GLY107 |
D | HOH2037 |
D | HOH2053 |
H | HOH50 |
Functional Information from PROSITE/UniProt
site_id | PS00903 |
Number of Residues | 38 |
Details | CYT_DCMP_DEAMINASES_1 Cytidine and deoxycytidylate deaminases zinc-binding region signature. HAEhiAIeraakvlgswrlegctlyvtle...........PCvm......CagtI |
Chain | Residue | Details |
A | HIS53-ILE90 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_00972 |
Chain | Residue | Details |
A | GLU55 | |
B | GLU55 | |
C | GLU55 | |
D | GLU55 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00972, ECO:0000269|PubMed:16415880 |
Chain | Residue | Details |
A | HIS53 | |
D | HIS53 | |
D | CYS83 | |
D | CYS86 | |
A | CYS83 | |
A | CYS86 | |
B | HIS53 | |
B | CYS83 | |
B | CYS86 | |
C | HIS53 | |
C | CYS83 | |
C | CYS86 |