2AYE
Crystal structure of the unliganded E2 DNA Binding Domain from HPV6a
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003700 | molecular_function | DNA-binding transcription factor activity |
| A | 0006275 | biological_process | regulation of DNA replication |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0042025 | cellular_component | host cell nucleus |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003700 | molecular_function | DNA-binding transcription factor activity |
| B | 0006275 | biological_process | regulation of DNA replication |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0042025 | cellular_component | host cell nucleus |
| C | 0003677 | molecular_function | DNA binding |
| C | 0003700 | molecular_function | DNA-binding transcription factor activity |
| C | 0006275 | biological_process | regulation of DNA replication |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0042025 | cellular_component | host cell nucleus |
| D | 0003677 | molecular_function | DNA binding |
| D | 0003700 | molecular_function | DNA-binding transcription factor activity |
| D | 0006275 | biological_process | regulation of DNA replication |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0042025 | cellular_component | host cell nucleus |
| E | 0003677 | molecular_function | DNA binding |
| E | 0003700 | molecular_function | DNA-binding transcription factor activity |
| E | 0006275 | biological_process | regulation of DNA replication |
| E | 0006355 | biological_process | regulation of DNA-templated transcription |
| E | 0042025 | cellular_component | host cell nucleus |
| F | 0003677 | molecular_function | DNA binding |
| F | 0003700 | molecular_function | DNA-binding transcription factor activity |
| F | 0006275 | biological_process | regulation of DNA replication |
| F | 0006355 | biological_process | regulation of DNA-templated transcription |
| F | 0042025 | cellular_component | host cell nucleus |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 D 201 |
| Chain | Residue |
| D | LYS297 |
| D | ARG300 |
| D | SER315 |
| D | THR316 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 202 |
| Chain | Residue |
| A | LYS297 |
| A | ARG300 |
| A | SER315 |
| A | THR316 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 E 203 |
| Chain | Residue |
| E | ARG300 |
| E | SER315 |
| E | THR316 |
| E | LYS297 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 204 |
| Chain | Residue |
| B | HOH64 |
| B | ARG302 |
| B | HIS306 |
| B | LYS349 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 D 205 |
| Chain | Residue |
| D | HOH95 |
| D | ARG302 |
| D | HIS306 |
| D | LYS349 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 206 |
| Chain | Residue |
| A | ARG302 |
| A | LYS305 |
| E | PRO352 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 F 207 |
| Chain | Residue |
| F | LYS297 |
| F | ARG300 |
| F | SER315 |
| F | THR316 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 C 208 |
| Chain | Residue |
| C | LYS297 |
| C | ARG300 |
| C | SER315 |
| C | THR316 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 C 209 |
| Chain | Residue |
| B | GLN343 |
| B | ASN346 |
| C | HOH135 |
| C | ARG307 |
| D | LYS323 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 210 |
| Chain | Residue |
| A | HOH38 |
| A | HOH48 |
| A | ARG302 |
| A | HIS306 |
| A | VAL348 |
| A | LYS349 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 C 211 |
| Chain | Residue |
| C | HOH72 |
| C | ARG302 |
| C | HIS306 |
| C | LYS349 |
| site_id | BC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 F 212 |
| Chain | Residue |
| F | ARG302 |
| F | HIS306 |
| F | LYS349 |
| site_id | BC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 367 |
| Chain | Residue |
| B | HOH33 |
| B | HIS336 |
| C | ALA283 |
| C | PRO285 |
| C | HIS336 |
| C | SER337 |
| C | GLU338 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL F 367 |
| Chain | Residue |
| E | ALA324 |
| F | HOH12 |
| F | THR284 |
| F | ASP311 |
| F | MET363 |
| F | LEU366 |
| site_id | BC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 368 |
| Chain | Residue |
| A | HOH70 |
| A | MET361 |
| B | HOH52 |
| B | ILE286 |
| B | GLN288 |
| B | THR332 |
| B | MET361 |
| site_id | BC7 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL D 367 |
| Chain | Residue |
| C | ILE286 |
| C | MET361 |
| D | HOH54 |
| D | HOH71 |
| D | HOH130 |
| D | ILE286 |
| D | GLN288 |
| D | TRP317 |
| D | THR332 |
| D | MET361 |
| site_id | BC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B 369 |
| Chain | Residue |
| A | HIS318 |
| B | HOH91 |
| B | LYS297 |
| B | SER315 |
| B | THR316 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 504 |
| Details | Region: {"description":"DNA-binding domain","evidences":[{"source":"HAMAP-Rule","id":"MF_04001","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
