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2AU6

Crystal structure of catalytic intermediate of inorganic pyrophosphatase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004427molecular_functioninorganic diphosphate phosphatase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006796biological_processphosphate-containing compound metabolic process
A0008270molecular_functionzinc ion binding
A0016020cellular_componentmembrane
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
A0050355molecular_functioninorganic triphosphate phosphatase activity
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE PO4 A 180
ChainResidue
ALYS29
AMN202
AMN203
AMN204
ACL208
AHOH353
AHOH515
AHOH553
AGLU31
ATYR55
AASP65
AASP67
AASP70
AASP102
ALYS104
AMN201

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN A 201
ChainResidue
AASP65
AASP70
AASP102
APO4180
APOP182
AF211
AHOH322

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MN A 202
ChainResidue
AASP70
APO4180
APOP182
AF211
AHOH308
AHOH315
AHOH352
AHOH353

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN A 203
ChainResidue
AASP97
AASP102
APO4180
APOP182
ACL208
AHOH364
AHOH515

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MN A 204
ChainResidue
AGLU31
AASP67
APO4180
APOP182
AHOH358
AHOH378
AHOH479
AHOH480
AHOH553

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN A 205
ChainResidue
ANA207
AHOH477
AHOH587
AHOH588

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 206
ChainResidue
ALYS142
AGLU145
ALYS148
AHOH335
AHOH392
AHOH476

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 207
ChainResidue
AASN24
AMN205
AHOH310
AHOH324
AHOH355
AHOH477
AHOH588

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CL A 208
ChainResidue
AASP97
AASP102
ALYS104
ATYR141
APO4180
APOP182
AMN203

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 209
ChainResidue
AALA7
AGLY8
AHIS60
AHOH478

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 210
ChainResidue
ALYS131
ATRP155
AHOH495
AHOH586

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE F A 211
ChainResidue
AASP65
AASP67
AASP70
APOP182
AMN201
AMN202
AHOH315
AHOH322
AHOH553

site_idBC4
Number of Residues28
DetailsBINDING SITE FOR RESIDUE POP A 182
ChainResidue
ALYS142
AMN201
AMN202
AMN203
AMN204
ACL208
AF211
AHOH350
AHOH352
AHOH353
AHOH358
AHOH364
AHOH378
AHOH515
AHOH532
AHOH550
AHOH553
ALYS29
AGLU31
AARG43
ATYR55
AASP65
AASP67
AASP70
AASP97
AASP102
ALYS104
ATYR141

Functional Information from PROSITE/UniProt
site_idPS00387
Number of Residues7
DetailsPPASE Inorganic pyrophosphatase signature. DGDPVDV
ChainResidueDetails
AASP65-VAL71

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00209","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1wgi
ChainResidueDetails
AASP67

246905

PDB entries from 2025-12-31

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