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2AOD

Crystal structure analysis of HIV-1 protease with a substrate analog P2-NC

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues30
DetailsBINDING SITE FOR RESIDUE 2NC B 400
ChainResidue
AARG8
AHOH1185
BARG108
BASP125
BGLY127
BALA128
BASP129
BASP130
BILE147
BGLY148
BGLY149
AASP25
BPRO181
BVAL182
BHOH1004
BHOH1014
BHOH1025
BHOH1027
BHOH1041
BHOH1043
BHOH1087
BHOH1154
AGLY27
BHOH1168
AALA28
AASP29
AGLY48
AGLY49
AILE50
AVAL82

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMS A 905
ChainResidue
AARG87
AASN88
ATHR91
BLEU105
BTRP106
BARG141

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 801
ChainResidue
AGLN18
AMET36
ASER37
BTHR112
BILE113
BLYS114
BGLU165
BALA167
BGLY168

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 802
ChainResidue
ALYS45
AMET46
APHE53
BHOH1003
BHOH1011
BHOH1041

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 803
ChainResidue
BGLU135
BLYS155
BARG157
BVAL177
BGLY178
BHOH1133

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ALLDTGADDTVI
ChainResidueDetails
AALA22-ILE33

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
AILE64
BILE164

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphotyrosine; by host => ECO:0000250
ChainResidueDetails
AILE64
BILE164

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a30
ChainResidueDetails
AASP25
ATHR26
BTHR126
BASP125

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a30
ChainResidueDetails
AASP25
BASP125

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PDB entries from 2024-07-17

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