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1ZTH

Crystal Structure of A.fulgidus Rio1 serine protein kinase bound to ADP and Manganese ion

Functional Information from GO Data
ChainGOidnamespacecontents
A0004672molecular_functionprotein kinase activity
A0004674molecular_functionprotein serine/threonine kinase activity
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0006468biological_processprotein phosphorylation
A0016787molecular_functionhydrolase activity
A0030490biological_processmaturation of SSU-rRNA
A0030688cellular_componentpreribosome, small subunit precursor
A0046872molecular_functionmetal ion binding
A0106310molecular_functionprotein serine kinase activity
B0004672molecular_functionprotein kinase activity
B0004674molecular_functionprotein serine/threonine kinase activity
B0005524molecular_functionATP binding
B0005829cellular_componentcytosol
B0006468biological_processprotein phosphorylation
B0016787molecular_functionhydrolase activity
B0030490biological_processmaturation of SSU-rRNA
B0030688cellular_componentpreribosome, small subunit precursor
B0046872molecular_functionmetal ion binding
B0106310molecular_functionprotein serine kinase activity
C0004672molecular_functionprotein kinase activity
C0004674molecular_functionprotein serine/threonine kinase activity
C0005524molecular_functionATP binding
C0005829cellular_componentcytosol
C0006468biological_processprotein phosphorylation
C0016787molecular_functionhydrolase activity
C0030490biological_processmaturation of SSU-rRNA
C0030688cellular_componentpreribosome, small subunit precursor
C0046872molecular_functionmetal ion binding
C0106310molecular_functionprotein serine kinase activity
D0004672molecular_functionprotein kinase activity
D0004674molecular_functionprotein serine/threonine kinase activity
D0005524molecular_functionATP binding
D0005829cellular_componentcytosol
D0006468biological_processprotein phosphorylation
D0016787molecular_functionhydrolase activity
D0030490biological_processmaturation of SSU-rRNA
D0030688cellular_componentpreribosome, small subunit precursor
D0046872molecular_functionmetal ion binding
D0106310molecular_functionprotein serine kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 902
ChainResidue
AASN201
AASP212
AADP901
AHOH942
AHOH1073

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 904
ChainResidue
BHOH1090
BASN201
BASP212
BADP903
BHOH911

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN C 906
ChainResidue
CASN201
CASP212
CADP905
CHOH1063

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN D 908
ChainResidue
DASN201
DASP212
DADP907
DHOH948
DHOH1049

site_idAC5
Number of Residues27
DetailsBINDING SITE FOR RESIDUE ADP A 901
ChainResidue
AILE55
ASER56
AVAL63
AALA78
ALYS80
APRO135
AMSE147
AGLU148
APHE149
AILE150
APRO156
AASN201
AMSE203
AILE211
AASP212
AMN902
AHOH905
AHOH912
AHOH915
AHOH926
AHOH942
AHOH955
AHOH971
AHOH990
AHOH1016
AHOH1073
BHOH1108

site_idAC6
Number of Residues26
DetailsBINDING SITE FOR RESIDUE ADP B 903
ChainResidue
AHOH961
BILE55
BSER56
BVAL63
BALA78
BLYS80
BPRO135
BMSE147
BGLU148
BPHE149
BILE150
BASN201
BILE211
BASP212
BMN904
BHOH905
BHOH910
BHOH911
BHOH918
BHOH922
BHOH988
BHOH1008
BHOH1009
BHOH1017
BHOH1073
BHOH1090

site_idAC7
Number of Residues28
DetailsBINDING SITE FOR RESIDUE ADP C 905
ChainResidue
DHOH979
CILE55
CSER56
CALA78
CLYS80
CPRO135
CMSE147
CGLU148
CPHE149
CILE150
CPRO156
CTHR159
CASN201
CILE211
CASP212
CMN906
CHOH908
CHOH910
CHOH912
CHOH919
CHOH924
CHOH928
CHOH960
CHOH974
CHOH1013
CHOH1028
CHOH1046
CHOH1063

site_idAC8
Number of Residues28
DetailsBINDING SITE FOR RESIDUE ADP D 907
ChainResidue
CHOH1085
DILE55
DSER56
DVAL63
DALA78
DLYS80
DPRO135
DMSE147
DGLU148
DPHE149
DILE150
DPRO156
DTHR159
DASN201
DILE211
DASP212
DMN908
DHOH914
DHOH915
DHOH924
DHOH935
DHOH943
DHOH959
DHOH983
DHOH986
DHOH1019
DHOH1029
DHOH1049

Functional Information from PROSITE/UniProt
site_idPS00109
Number of Residues13
DetailsPROTEIN_KINASE_TYR Tyrosine protein kinases specific active-site signature. LVHaDLSEYNIMY
ChainResidueDetails
ALEU192-TYR204

site_idPS01245
Number of Residues12
DetailsRIO1 RIO1/ZK632.3/MJ0444 family signature. LVHADLSEYNiM
ChainResidueDetails
ALEU192-MSE203

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:Q9BRS2, ECO:0000255|PROSITE-ProRule:PRU00159
ChainResidueDetails
AASP196
BASP196
CASP196
DASP196

site_idSWS_FT_FI2
Number of Residues4
DetailsACT_SITE: 4-aspartylphosphate intermediate => ECO:0000250|UniProtKB:Q9BRS2
ChainResidueDetails
AASP212
BASP212
CASP212
DASP212

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00159
ChainResidueDetails
AILE55
BILE55
CILE55
DILE55

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000269|PubMed:16008568, ECO:0007744|PDB:1ZP9
ChainResidueDetails
ALYS80
BLYS80
CLYS80
DLYS80

site_idSWS_FT_FI5
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:16008568, ECO:0007744|PDB:1ZP9
ChainResidueDetails
CGLU148
CILE150
DGLU148
DILE150
AGLU148
AILE150
BGLU148
BILE150

site_idSWS_FT_FI6
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O30245
ChainResidueDetails
DTYR200
ATYR200
BTYR200
CTYR200

site_idSWS_FT_FI7
Number of Residues8
DetailsBINDING: BINDING => ECO:0000305|PubMed:16008568
ChainResidueDetails
CASN201
CASP212
DASN201
DASP212
AASN201
AASP212
BASN201
BASP212

site_idSWS_FT_FI8
Number of Residues4
DetailsMOD_RES: Phosphoserine; by autocatalysis => ECO:0000269|PubMed:16008568
ChainResidueDetails
DSER108
ASER108
BSER108
CSER108

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PDB entries from 2024-06-12

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