1ZQ9
Crystal structure of human Dimethyladenosine transferase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000154 | biological_process | rRNA modification |
A | 0000179 | molecular_function | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
A | 0003723 | molecular_function | RNA binding |
A | 0005634 | cellular_component | nucleus |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005730 | cellular_component | nucleolus |
A | 0005829 | cellular_component | cytosol |
A | 0006364 | biological_process | rRNA processing |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0031167 | biological_process | rRNA methylation |
A | 0032040 | cellular_component | small-subunit processome |
A | 0032259 | biological_process | methylation |
A | 0042274 | biological_process | ribosomal small subunit biogenesis |
A | 0052909 | molecular_function | 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity |
A | 2000234 | biological_process | positive regulation of rRNA processing |
B | 0000154 | biological_process | rRNA modification |
B | 0000179 | molecular_function | rRNA (adenine-N6,N6-)-dimethyltransferase activity |
B | 0003723 | molecular_function | RNA binding |
B | 0005634 | cellular_component | nucleus |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005730 | cellular_component | nucleolus |
B | 0005829 | cellular_component | cytosol |
B | 0006364 | biological_process | rRNA processing |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0031167 | biological_process | rRNA methylation |
B | 0032040 | cellular_component | small-subunit processome |
B | 0032259 | biological_process | methylation |
B | 0042274 | biological_process | ribosomal small subunit biogenesis |
B | 0052909 | molecular_function | 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity |
B | 2000234 | biological_process | positive regulation of rRNA processing |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE SAM A 4000 |
Chain | Residue |
A | GLN36 |
A | GLY112 |
A | ASP113 |
A | VAL114 |
A | ASN128 |
A | LEU129 |
A | PRO130 |
A | MET154 |
A | PHE196 |
A | SER204 |
A | HOH4166 |
A | HIS37 |
A | HOH4236 |
A | HOH4282 |
A | HOH4329 |
A | ILE38 |
A | GLY64 |
A | GLY66 |
A | CYS84 |
A | GLU85 |
A | LEU86 |
A | LEU90 |
site_id | AC2 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE SAM B 4001 |
Chain | Residue |
B | HIS37 |
B | GLY64 |
B | GLY66 |
B | CYS84 |
B | GLU85 |
B | LEU86 |
B | LEU90 |
B | GLY112 |
B | ASP113 |
B | VAL114 |
B | ASN128 |
B | LEU129 |
B | PRO130 |
B | TYR131 |
B | ILE133 |
B | PHE196 |
B | HOH4125 |
B | HOH4166 |
B | HOH4189 |
B | HOH4208 |
B | HOH4394 |
Functional Information from PROSITE/UniProt
site_id | PS01131 |
Number of Residues | 28 |
Details | RRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VLEvGPGtGnMTvklLekakk...VvACElD |
Chain | Residue | Details |
A | VAL60-ASP87 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01026, ECO:0000269|Ref.9 |
Chain | Residue | Details |
A | HIS37 | |
B | GLU85 | |
B | ASP113 | |
B | ASN128 | |
A | LEU39 | |
A | GLY64 | |
A | GLU85 | |
A | ASP113 | |
A | ASN128 | |
B | HIS37 | |
B | LEU39 | |
B | GLY64 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1qam |
Chain | Residue | Details |
A | GLY64 | |
A | GLU85 | |
A | ASN128 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1qam |
Chain | Residue | Details |
B | GLY64 | |
B | GLU85 | |
B | ASN128 |