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1ZEM

Crystal Structure of NAD+-Bound Xylitol Dehydrogenase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0016491molecular_functionoxidoreductase activity
B0000166molecular_functionnucleotide binding
B0016491molecular_functionoxidoreductase activity
C0000166molecular_functionnucleotide binding
C0016491molecular_functionoxidoreductase activity
D0000166molecular_functionnucleotide binding
D0016491molecular_functionoxidoreductase activity
E0000166molecular_functionnucleotide binding
E0016491molecular_functionoxidoreductase activity
F0000166molecular_functionnucleotide binding
F0016491molecular_functionoxidoreductase activity
G0000166molecular_functionnucleotide binding
G0016491molecular_functionoxidoreductase activity
H0000166molecular_functionnucleotide binding
H0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 3264
ChainResidue
BHOH3267
BHOH3277
DHOH5264
DHOH5271
DHOH5273
DHOH5288

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 3265
ChainResidue
CHOH4265
CHOH4279
CHOH4446
AHOH2270
AHOH2275
AHOH2338

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG E 3266
ChainResidue
EHOH6266
EHOH6272
EHOH6285
GHOH8267
GHOH8269
GHOH8274

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG F 3267
ChainResidue
FHOH7264
FHOH7265
FHOH7276
HHOH9266
HHOH9275
HHOH9277

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 3268
ChainResidue
CHOH4362
CHOH4376
CHOH4392
CHOH4428
CHOH4429
CHOH4430

site_idAC6
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD A 2263
ChainResidue
AGLY14
AGLY16
AGLY17
AASN18
AILE19
AASP38
AMET39
ACYS63
AASP64
AVAL65
AASN91
AALA92
AGLY93
AILE115
ATHR142
AALA143
ASER144
ATYR157
ALYS161
APRO187
AGLY188
AMET190
AHOH2268
AHOH2385
AHOH2422

site_idAC7
Number of Residues29
DetailsBINDING SITE FOR RESIDUE NAD B 3263
ChainResidue
BGLY14
BGLY16
BGLY17
BASN18
BILE19
BASP38
BMET39
BCYS63
BASP64
BVAL65
BASN91
BALA92
BGLY93
BILE115
BTHR142
BALA143
BSER144
BTYR157
BLYS161
BPRO187
BGLY188
BMET190
BHOH3297
BHOH3343
BHOH3398
BHOH3418
BHOH3420
BHOH3431
BHOH3460

site_idAC8
Number of Residues33
DetailsBINDING SITE FOR RESIDUE NAD C 4263
ChainResidue
CALA143
CSER144
CTYR157
CLYS161
CPRO187
CMET190
CMET195
CHOH4267
CHOH4295
CHOH4321
CHOH4360
CHOH4366
CHOH4384
CHOH4387
CHOH4431
CHOH4432
CHOH4435
CHOH4507
CGLY14
CGLY16
CGLY17
CASN18
CILE19
CASP38
CMET39
CCYS63
CASP64
CVAL65
CASN91
CALA92
CGLY93
CILE115
CTHR142

site_idAC9
Number of Residues27
DetailsBINDING SITE FOR RESIDUE NAD D 5263
ChainResidue
DGLY14
DGLY16
DGLY17
DASN18
DILE19
DASP38
DMET39
DCYS63
DASP64
DVAL65
DASN91
DALA92
DGLY93
DILE115
DTHR142
DALA143
DSER144
DTYR157
DLYS161
DPRO187
DGLY188
DMET190
DMET195
DHOH5265
DHOH5392
DHOH5411
DHOH5451

site_idBC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD E 6263
ChainResidue
EGLY14
EGLY16
EGLY17
EASN18
EILE19
EASP38
EMET39
ECYS63
EASP64
EVAL65
EASN91
EALA92
EGLY93
ETHR142
EALA143
ESER144
ETYR157
ELYS161
EPRO187
EGLY188
EMET190
EMET195
EHOH6291
EHOH6376
EHOH6442

site_idBC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE NAD F 7263
ChainResidue
FGLY14
FGLY16
FGLY17
FASN18
FILE19
FASP38
FMET39
FCYS63
FASP64
FVAL65
FASN91
FALA92
FGLY93
FTHR142
FALA143
FSER144
FTYR157
FLYS161
FPRO187
FGLY188
FMET190
FHOH7269
FHOH7365
FHOH7482

site_idBC3
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD G 8263
ChainResidue
GGLY14
GGLY16
GGLY17
GASN18
GILE19
GASP38
GMET39
GCYS63
GASP64
GVAL65
GASN91
GALA92
GGLY93
GTHR142
GALA143
GSER144
GTYR157
GLYS161
GPRO187
GGLY188
GMET190
GHOH8296
GHOH8379
GHOH8388
GHOH8451

site_idBC4
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAD H 9263
ChainResidue
HGLY14
HGLY17
HASN18
HILE19
HASP38
HMET39
HCYS63
HASP64
HVAL65
HASN91
HALA92
HGLY93
HTHR142
HALA143
HSER144
HTYR157
HLYS161
HPRO187
HGLY188
HMET190
HHOH9267
HHOH9350
HHOH9352
HHOH9405
HHOH9443
HHOH9466

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SmagvkgppnMaaYGTSKGAIiALTeTAA
ChainResidueDetails
ASER144-ALA172

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ALYS161
ASER144
ATYR157

site_idCSA10
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BLYS161
BASN116
BSER144
BTYR157

site_idCSA11
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CLYS161
CASN116
CSER144
CTYR157

site_idCSA12
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DLYS161
DASN116
DSER144
DTYR157

site_idCSA13
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ELYS161
EASN116
ESER144
ETYR157

site_idCSA14
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
FLYS161
FASN116
FSER144
FTYR157

site_idCSA15
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
GLYS161
GASN116
GSER144
GTYR157

site_idCSA16
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
HLYS161
HASN116
HSER144
HTYR157

site_idCSA17
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
AMET154
ALYS161

site_idCSA18
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BMET154
BLYS161

site_idCSA19
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CMET154
CLYS161

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BLYS161
BSER144
BTYR157

site_idCSA20
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DMET154
DLYS161

site_idCSA21
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
EMET154
ELYS161

site_idCSA22
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
FMET154
FLYS161

site_idCSA23
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
GMET154
GLYS161

site_idCSA24
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
HMET154
HLYS161

site_idCSA25
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ALYS161
ATYR157

site_idCSA26
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BLYS161
BTYR157

site_idCSA27
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CLYS161
CTYR157

site_idCSA28
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DLYS161
DTYR157

site_idCSA29
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ELYS161
ETYR157

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CLYS161
CSER144
CTYR157

site_idCSA30
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
FLYS161
FTYR157

site_idCSA31
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
GLYS161
GTYR157

site_idCSA32
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
HLYS161
HTYR157

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DLYS161
DSER144
DTYR157

site_idCSA5
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ELYS161
ESER144
ETYR157

site_idCSA6
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
FLYS161
FSER144
FTYR157

site_idCSA7
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
GLYS161
GSER144
GTYR157

site_idCSA8
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
HLYS161
HSER144
HTYR157

site_idCSA9
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ALYS161
AASN116
ASER144
ATYR157

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PDB entries from 2024-07-17

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