1ZC8
Coordinates of tmRNA, SmpB, EF-Tu and h44 fitted into Cryo-EM map of the 70S ribosome and tmRNA complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| K | 0003723 | molecular_function | RNA binding |
| Y | 0000166 | molecular_function | nucleotide binding |
| Y | 0000287 | molecular_function | magnesium ion binding |
| Y | 0003723 | molecular_function | RNA binding |
| Y | 0003746 | molecular_function | translation elongation factor activity |
| Y | 0003924 | molecular_function | GTPase activity |
| Y | 0005525 | molecular_function | GTP binding |
| Y | 0005737 | cellular_component | cytoplasm |
| Y | 0005829 | cellular_component | cytosol |
| Y | 0006412 | biological_process | translation |
| Y | 0006414 | biological_process | translational elongation |
| Y | 0016787 | molecular_function | hydrolase activity |
| Y | 0046872 | molecular_function | metal ion binding |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 205 |
| Details | Domain: {"description":"tr-type G"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 7 |
| Details | Region: {"description":"G1","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Region: {"description":"G2","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 3 |
| Details | Region: {"description":"G3","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 3 |
| Details | Region: {"description":"G4","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Region: {"description":"G5","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 10 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"11278992","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1HA3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C78","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V5G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V5Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V5R","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V5S","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4V8Q","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00118","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PDB","id":"2C78","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P0CE47","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| Y | ASP21 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1ksj |
| Chain | Residue | Details |
| Y | HIS85 |
