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1Z7E

Crystal structure of full length ArnA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0009058biological_processbiosynthetic process
A0009103biological_processlipopolysaccharide biosynthetic process
A0009245biological_processlipid A biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0016740molecular_functiontransferase activity
A0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
A0016831molecular_functioncarboxy-lyase activity
A0032991cellular_componentprotein-containing complex
A0033320biological_processUDP-D-xylose biosynthetic process
A0042802molecular_functionidentical protein binding
A0046493biological_processlipid A metabolic process
A0046677biological_processresponse to antibiotic
A0048040molecular_functionUDP-glucuronate decarboxylase activity
A0070403molecular_functionNAD+ binding
A0099618molecular_functionUDP-glucuronic acid dehydrogenase activity
A0099619molecular_functionUDP-4-amino-4-deoxy-L-arabinose formyltransferase activity
A2001315biological_processUDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process
B0003824molecular_functioncatalytic activity
B0005515molecular_functionprotein binding
B0009058biological_processbiosynthetic process
B0009103biological_processlipopolysaccharide biosynthetic process
B0009245biological_processlipid A biosynthetic process
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0016740molecular_functiontransferase activity
B0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
B0016831molecular_functioncarboxy-lyase activity
B0032991cellular_componentprotein-containing complex
B0033320biological_processUDP-D-xylose biosynthetic process
B0042802molecular_functionidentical protein binding
B0046493biological_processlipid A metabolic process
B0046677biological_processresponse to antibiotic
B0048040molecular_functionUDP-glucuronate decarboxylase activity
B0070403molecular_functionNAD+ binding
B0099618molecular_functionUDP-glucuronic acid dehydrogenase activity
B0099619molecular_functionUDP-4-amino-4-deoxy-L-arabinose formyltransferase activity
B2001315biological_processUDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process
C0003824molecular_functioncatalytic activity
C0005515molecular_functionprotein binding
C0009058biological_processbiosynthetic process
C0009103biological_processlipopolysaccharide biosynthetic process
C0009245biological_processlipid A biosynthetic process
C0016491molecular_functionoxidoreductase activity
C0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
C0016740molecular_functiontransferase activity
C0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
C0016831molecular_functioncarboxy-lyase activity
C0032991cellular_componentprotein-containing complex
C0033320biological_processUDP-D-xylose biosynthetic process
C0042802molecular_functionidentical protein binding
C0046493biological_processlipid A metabolic process
C0046677biological_processresponse to antibiotic
C0048040molecular_functionUDP-glucuronate decarboxylase activity
C0070403molecular_functionNAD+ binding
C0099618molecular_functionUDP-glucuronic acid dehydrogenase activity
C0099619molecular_functionUDP-4-amino-4-deoxy-L-arabinose formyltransferase activity
C2001315biological_processUDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process
D0003824molecular_functioncatalytic activity
D0005515molecular_functionprotein binding
D0009058biological_processbiosynthetic process
D0009103biological_processlipopolysaccharide biosynthetic process
D0009245biological_processlipid A biosynthetic process
D0016491molecular_functionoxidoreductase activity
D0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
D0016740molecular_functiontransferase activity
D0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
D0016831molecular_functioncarboxy-lyase activity
D0032991cellular_componentprotein-containing complex
D0033320biological_processUDP-D-xylose biosynthetic process
D0042802molecular_functionidentical protein binding
D0046493biological_processlipid A metabolic process
D0046677biological_processresponse to antibiotic
D0048040molecular_functionUDP-glucuronate decarboxylase activity
D0070403molecular_functionNAD+ binding
D0099618molecular_functionUDP-glucuronic acid dehydrogenase activity
D0099619molecular_functionUDP-4-amino-4-deoxy-L-arabinose formyltransferase activity
D2001315biological_processUDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process
E0003824molecular_functioncatalytic activity
E0005515molecular_functionprotein binding
E0009058biological_processbiosynthetic process
E0009103biological_processlipopolysaccharide biosynthetic process
E0009245biological_processlipid A biosynthetic process
E0016491molecular_functionoxidoreductase activity
E0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
E0016740molecular_functiontransferase activity
E0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
E0016831molecular_functioncarboxy-lyase activity
E0032991cellular_componentprotein-containing complex
E0033320biological_processUDP-D-xylose biosynthetic process
E0042802molecular_functionidentical protein binding
E0046493biological_processlipid A metabolic process
E0046677biological_processresponse to antibiotic
E0048040molecular_functionUDP-glucuronate decarboxylase activity
E0070403molecular_functionNAD+ binding
E0099618molecular_functionUDP-glucuronic acid dehydrogenase activity
E0099619molecular_functionUDP-4-amino-4-deoxy-L-arabinose formyltransferase activity
E2001315biological_processUDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process
F0003824molecular_functioncatalytic activity
F0005515molecular_functionprotein binding
F0009058biological_processbiosynthetic process
F0009103biological_processlipopolysaccharide biosynthetic process
F0009245biological_processlipid A biosynthetic process
F0016491molecular_functionoxidoreductase activity
F0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
F0016740molecular_functiontransferase activity
F0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
F0016831molecular_functioncarboxy-lyase activity
F0032991cellular_componentprotein-containing complex
F0033320biological_processUDP-D-xylose biosynthetic process
F0042802molecular_functionidentical protein binding
F0046493biological_processlipid A metabolic process
F0046677biological_processresponse to antibiotic
F0048040molecular_functionUDP-glucuronate decarboxylase activity
F0070403molecular_functionNAD+ binding
F0099618molecular_functionUDP-glucuronic acid dehydrogenase activity
F0099619molecular_functionUDP-4-amino-4-deoxy-L-arabinose formyltransferase activity
F2001315biological_processUDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP A 1001
ChainResidue
AASN324
ALEU389
AVAL390
AALA393
AARG510
AGLY325
APHE326
AILE327
AASP347
AILE348
AGLY367
AASP368
AILE369

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP B 1002
ChainResidue
BASN324
BGLY325
BPHE326
BILE327
BASP347
BILE348
BGLY367
BASP368
BILE369
BLEU389
BVAL390
BALA393
BARG510

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE ATP C 1003
ChainResidue
CGLY322
CGLY325
CPHE326
CILE327
CASP347
CILE348
CGLY367
CASP368
CILE369
CLEU389
CVAL390
CARG510

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE ATP D 1004
ChainResidue
DGLY325
DPHE326
DILE327
DASP347
DILE348
DGLY367
DASP368
DILE369
DLEU389
DVAL390
DARG510

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE ATP E 1005
ChainResidue
EGLY325
EPHE326
EILE327
EASP347
EILE348
EGLY367
EASP368
EILE369
ELEU389
EVAL390
EARG510

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE ATP F 1006
ChainResidue
FASN324
FGLY325
FPHE326
FILE327
FASP347
FILE348
FGLY367
FASP368
FILE369
FLEU389
FVAL390
FALA393
FARG510

site_idAC7
Number of Residues24
DetailsBINDING SITE FOR RESIDUE UGA A 1101
ChainResidue
AALA393
APRO395
ATYR398
ATHR432
ASER433
AGLU434
AARG460
ATYR463
APRO490
APHE491
AASN492
AARG510
AALA511
AGLN514
ALYS526
ALEU527
AILE528
AGLN533
AARG535
AILE574
ATYR609
ATYR613
AASP615
AARG619

site_idAC8
Number of Residues24
DetailsBINDING SITE FOR RESIDUE UGA B 1102
ChainResidue
BTYR398
BTHR432
BSER433
BGLU434
BARG460
BTYR463
BPRO490
BPHE491
BASN492
BARG510
BALA511
BGLN514
BLYS526
BLEU527
BILE528
BGLN533
BARG535
BILE574
BTYR609
BTYR613
BASP615
BARG619
BALA393
BPRO395

site_idAC9
Number of Residues24
DetailsBINDING SITE FOR RESIDUE UGA C 1103
ChainResidue
CALA393
CPRO395
CTYR398
CTHR432
CSER433
CGLU434
CARG460
CTYR463
CPRO490
CPHE491
CASN492
CARG510
CALA511
CGLN514
CLYS526
CLEU527
CILE528
CGLN533
CARG535
CILE574
CTYR609
CTYR613
CASP615
CARG619

site_idBC1
Number of Residues24
DetailsBINDING SITE FOR RESIDUE UGA D 1104
ChainResidue
DALA393
DPRO395
DTYR398
DTHR432
DSER433
DGLU434
DARG460
DTYR463
DPRO490
DPHE491
DASN492
DARG510
DALA511
DGLN514
DLYS526
DLEU527
DILE528
DGLN533
DARG535
DILE574
DTYR609
DTYR613
DASP615
DARG619

site_idBC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE UGA E 1105
ChainResidue
EALA393
EPRO395
ETYR398
ETHR432
ESER433
EGLU434
EARG460
ETYR463
EPRO490
EPHE491
EASN492
EARG510
EALA511
EGLN514
ELYS526
ELEU527
EILE528
EGLN533
EARG535
EILE574
ETYR609
ETYR613
EASP615
EARG619

site_idBC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE UGA F 1106
ChainResidue
FALA393
FPRO395
FTYR398
FTHR432
FSER433
FGLU434
FARG460
FTYR463
FPRO490
FPHE491
FASN492
FARG510
FALA511
FGLN514
FLYS526
FLEU527
FILE528
FGLN533
FARG535
FILE574
FTYR609
FTYR613
FASP615
FARG619

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton donor; for formyltransferase activity
ChainResidueDetails
AHIS104
BHIS104
CHIS104
DHIS104
EHIS104
FHIS104

site_idSWS_FT_FI2
Number of Residues6
DetailsACT_SITE: Proton acceptor; for decarboxylase activity
ChainResidueDetails
AGLU434
BGLU434
CGLU434
DGLU434
EGLU434
FGLU434

site_idSWS_FT_FI3
Number of Residues6
DetailsACT_SITE: Proton donor; for decarboxylase activity
ChainResidueDetails
AARG619
BARG619
CARG619
DARG619
EARG619
FARG619

site_idSWS_FT_FI4
Number of Residues72
DetailsBINDING:
ChainResidueDetails
AHIS86
AASN492
ALYS526
ATYR613
BHIS86
BARG114
BVAL136
BASP347
BASP368
BALA393
BTYR398
AARG114
BTHR432
BARG460
BASN492
BLYS526
BTYR613
CHIS86
CARG114
CVAL136
CASP347
CASP368
AVAL136
CALA393
CTYR398
CTHR432
CARG460
CASN492
CLYS526
CTYR613
DHIS86
DARG114
DVAL136
AASP347
DASP347
DASP368
DALA393
DTYR398
DTHR432
DARG460
DASN492
DLYS526
DTYR613
EHIS86
AASP368
EARG114
EVAL136
EASP347
EASP368
EALA393
ETYR398
ETHR432
EARG460
EASN492
ELYS526
AALA393
ETYR613
FHIS86
FARG114
FVAL136
FASP347
FASP368
FALA393
FTYR398
FTHR432
FARG460
ATYR398
FASN492
FLYS526
FTYR613
ATHR432
AARG460

site_idSWS_FT_FI5
Number of Residues6
DetailsSITE: Transition state stabilizer
ChainResidueDetails
AASN102
BASN102
CASN102
DASN102
EASN102
FASN102

site_idSWS_FT_FI6
Number of Residues6
DetailsSITE: Raises pKa of active site His
ChainResidueDetails
AASP140
BASP140
CASP140
DASP140
EASP140
FASP140

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
AASN102
AHIS104
ATHR131
AASP140

site_idCSA10
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
DASN102
DHIS104
DASP140

site_idCSA11
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
EASN102
EHIS104
EASP140

site_idCSA12
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
FASN102
FHIS104
FASP140

site_idCSA13
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
ATYR463
ALYS467
ATHR432

site_idCSA14
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
BTYR463
BLYS467
BTHR432

site_idCSA15
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
CTYR463
CLYS467
CTHR432

site_idCSA16
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
DTYR463
DLYS467
DTHR432

site_idCSA17
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
ETYR463
ELYS467
ETHR432

site_idCSA18
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
FTYR463
FLYS467
FTHR432

site_idCSA19
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
AHIS104
AASP140

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
BASN102
BHIS104
BTHR131
BASP140

site_idCSA20
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
BHIS104
BASP140

site_idCSA21
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
CHIS104
CASP140

site_idCSA22
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
DHIS104
DASP140

site_idCSA23
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
EHIS104
EASP140

site_idCSA24
Number of Residues2
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
FHIS104
FASP140

site_idCSA25
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
ATYR463
ATHR432
ALYS467
AGLU434

site_idCSA26
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
BTYR463
BTHR432
BLYS467
BGLU434

site_idCSA27
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
CTYR463
CTHR432
CLYS467
CGLU434

site_idCSA28
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
DTYR463
DTHR432
DLYS467
DGLU434

site_idCSA29
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
ETYR463
ETHR432
ELYS467
EGLU434

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
CASN102
CHIS104
CTHR131
CASP140

site_idCSA30
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
FTYR463
FTHR432
FLYS467
FGLU434

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
DASN102
DHIS104
DTHR131
DASP140

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
EASN102
EHIS104
ETHR131
EASP140

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
FASN102
FHIS104
FTHR131
FASP140

site_idCSA7
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
AASN102
AHIS104
AASP140

site_idCSA8
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
BASN102
BHIS104
BASP140

site_idCSA9
Number of Residues3
DetailsAnnotated By Reference To The Literature 1c2t
ChainResidueDetails
CASN102
CHIS104
CASP140

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PDB entries from 2024-07-24

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