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1Z4P

Structure of the D41N variant of the human mitochondrial deoxyribonucleotidase in complex with deoxyriboguanosine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
X0008253molecular_function5'-nucleotidase activity
X0009264biological_processdeoxyribonucleotide catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG X 1001
ChainResidue
XDGP1
XASN41
XASP43
XASP176
XHOH1075
XHOH1110

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE DGP X 1
ChainResidue
XPHE75
XTRP76
XVAL77
XSER78
XTRP96
XPHE102
XSER131
XLYS165
XMG1001
XHOH1007
XHOH1071
XHOH1075
XHOH1078
XHOH1108
XHOH1110
XASN41
XASP43
XPHE49

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Nucleophile
ChainResidueDetails
XASN41

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000305
ChainResidueDetails
XASP43

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:12352955
ChainResidueDetails
XASN41
XASP176

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING:
ChainResidueDetails
XASP43
XPHE49
XPHE75
XTRP76
XVAL77
XTRP96
XTHR130
XLYS165

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 812
ChainResidueDetails
XASN41covalently attached, metal ligand, nucleofuge, nucleophile
XASP43metal ligand
XASP176metal ligand

218853

PDB entries from 2024-04-24

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