Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1YTM

Crystal structure of phosphoenolpyruvate carboxykinase of Anaerobiospirillum succiniciproducens complexed with ATP, oxalate, magnesium and manganese ions

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004611molecular_functionphosphoenolpyruvate carboxykinase activity
A0004612molecular_functionphosphoenolpyruvate carboxykinase (ATP) activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006094biological_processgluconeogenesis
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0017076molecular_functionpurine nucleotide binding
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0004611molecular_functionphosphoenolpyruvate carboxykinase activity
B0004612molecular_functionphosphoenolpyruvate carboxykinase (ATP) activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006094biological_processgluconeogenesis
B0016829molecular_functionlyase activity
B0016831molecular_functioncarboxy-lyase activity
B0017076molecular_functionpurine nucleotide binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 998
ChainResidue
ATHR249
AATP541
AHOH1002
AHOH1003
AHOH1222

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 999
ChainResidue
AOXD543
ALYS206
AHIS225
AASP263
AATP541

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1998
ChainResidue
BHOH9
BHOH229
BHOH351
BTHR1249
BASP1262
BATP1541

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 1999
ChainResidue
BLYS1206
BHIS1225
BASP1263
BATP1541
BOXD1543

site_idAC5
Number of Residues25
DetailsBINDING SITE FOR RESIDUE ATP A 541
ChainResidue
AHIS225
ALEU243
ASER244
AGLY245
ATHR246
AGLY247
ALYS248
ATHR249
ATHR250
AASP263
ALYS282
AARG327
ATHR435
AARG443
AILE444
AILE446
ATHR449
AOXD543
AMG998
AMN999
AHOH1002
AHOH1003
AHOH1018
AHOH1033
AHOH1089

site_idAC6
Number of Residues24
DetailsBINDING SITE FOR RESIDUE ATP B 1541
ChainResidue
BHOH9
BHOH119
BHOH129
BHOH141
BHOH170
BHIS1225
BLEU1243
BSER1244
BGLY1245
BTHR1246
BGLY1247
BLYS1248
BTHR1249
BTHR1250
BASP1263
BLYS1282
BARG1327
BTHR1435
BARG1443
BILE1444
BTHR1449
BOXD1543
BMG1998
BMN1999

site_idAC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE OXD A 543
ChainResidue
AARG60
ATYR200
ALYS206
AHIS225
ASER244
AASP263
AARG327
APHE407
AATP541
AMN999
AHOH1041
AHOH1060
AHOH1224

site_idAC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE OXD B 1543
ChainResidue
BHOH13
BHOH143
BHOH356
BARG1060
BTYR1200
BLYS1206
BHIS1225
BSER1244
BASP1263
BTYR1280
BARG1327
BPHE1407
BATP1541
BMN1999

Functional Information from PROSITE/UniProt
site_idPS00532
Number of Residues16
DetailsPEPCK_ATP Phosphoenolpyruvate carboxykinase (ATP) signature. LIGDDEHgWdDdGVfN
ChainResidueDetails
ALEU259-ASN274

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00453","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00453","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15890557","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues16
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15890557","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1aq2
ChainResidueDetails
ALYS248
AHIS225
AARG327

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1aq2
ChainResidueDetails
BARG1327
BLYS1248
BHIS1225

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1aq2
ChainResidueDetails
AHIS225
AARG327

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1aq2
ChainResidueDetails
BARG1327
BHIS1225

249697

PDB entries from 2026-02-25

PDB statisticsPDBj update infoContact PDBjnumon