1YRA
PAB0955 crystal structure : a GTPase in GDP bound form from Pyrococcus abyssi
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003924 | molecular_function | GTPase activity |
| A | 0005525 | molecular_function | GTP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003924 | molecular_function | GTPase activity |
| B | 0005525 | molecular_function | GTP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE GDP A 401 |
| Chain | Residue |
| A | GLY10 |
| A | ALA224 |
| A | LYS225 |
| A | HOH581 |
| A | GLY12 |
| A | LYS13 |
| A | THR14 |
| A | THR15 |
| A | ASN165 |
| A | LYS166 |
| A | ASP168 |
| A | SER223 |
| site_id | AC2 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE GDP B 402 |
| Chain | Residue |
| B | GLY10 |
| B | SER11 |
| B | GLY12 |
| B | LYS13 |
| B | THR14 |
| B | THR15 |
| B | ASN165 |
| B | LYS166 |
| B | ASP168 |
| B | LEU169 |
| B | SER223 |
| B | ALA224 |
| B | LYS225 |
| B | HOH561 |
| B | HOH568 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 14 |
| Details | Motif: {"description":"G1","evidences":[{"source":"PROSITE-ProRule","id":"PRU01416","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Motif: {"description":"G2","evidences":[{"source":"PROSITE-ProRule","id":"PRU01416","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Motif: {"description":"Gly-Pro-Asn (GPN)-loop; involved in dimer interface","evidences":[{"source":"PROSITE-ProRule","id":"PRU01416","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"17468740","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | Motif: {"description":"G3","evidences":[{"source":"PROSITE-ProRule","id":"PRU01416","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | Motif: {"description":"G4","evidences":[{"source":"PROSITE-ProRule","id":"PRU01416","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | Motif: {"description":"G5","evidences":[{"source":"PROSITE-ProRule","id":"PRU01416","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17468740","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YR7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 10 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17468740","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YR7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YR8","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17468740","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YRB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2OXR","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P47122","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17468740","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YR9","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17468740","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1YR7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 2 |
| Details | Site: {"description":"Stabilizes the phosphate intermediate; shared with dimeric partner","evidences":[{"source":"PubMed","id":"17468740","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI14 |
| Number of Residues | 246 |
| Details | Domain: {"description":"GPN-loop core GTPase","evidences":[{"source":"PROSITE-ProRule","id":"PRU01416","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
