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1YP3

Crystal structure of potato tuber ADP-glucose pyrophosphorylase in complex with ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0005978biological_processglycogen biosynthetic process
A0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
A0009058biological_processbiosynthetic process
B0005978biological_processglycogen biosynthetic process
B0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
B0009058biological_processbiosynthetic process
C0005978biological_processglycogen biosynthetic process
C0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
C0009058biological_processbiosynthetic process
D0005978biological_processglycogen biosynthetic process
D0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
D0009058biological_processbiosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1000
ChainResidue
AARG41
APRO47
AARG53
ASER80
AASP370
ALYS404
ALYS441

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 1001
ChainResidue
BSER80
BASP370
BLYS404
BLYS441
BHOH1054
BARG41
BARG53

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 1002
ChainResidue
CARG41
CARG53
CSER80
CASP370
CLYS404
CLYS441

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 D 1003
ChainResidue
DARG41
DARG53
DASP370
DLYS404
DLYS441

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 1005
ChainResidue
BARG83
CLYS69
CHIS134
CTHR135
CHOH1023

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 1006
ChainResidue
BLYS69
BHIS134
BTHR135
BHOH1021

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1007
ChainResidue
ALYS69
AGLU133
AHIS134
ATHR135

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1008
ChainResidue
AARG53
AHIS84
AGLN314
AARG316
AHOH1068

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 1009
ChainResidue
BARG53
BHIS84
BGLN314
BARG316

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 1010
ChainResidue
CARG53
CHIS84
CGLN314
CARG316
CHOH1074

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 1011
ChainResidue
DARG53
DHIS84
DGLN314
DARG316
DLYS404
DHOH1034
DHOH1038

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1020
ChainResidue
AGLY29
AGLY31
ATHR32
AARG33
ALYS43
AATP757

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 1022
ChainResidue
CGLY28
CGLY29
CALA30
CGLY31
CTHR32
CARG33
CLYS43

site_idBC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ATP A 757
ChainResidue
ALEU26
AGLY28
ALYS43
ALEU73
AGLN118
AGLY119
ATHR120
AALA123
AALA143
AGLY144
AASP145
AASP253
APHE254
AGLY255
ASER256
ASO41020
AHOH1023
AHOH1085

site_idBC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ATP C 758
ChainResidue
CALA143
CGLY144
CASP145
CHIS146
CGLY231
CASP253
CPHE254
CGLY255
CSER256
CHOH1034
CHOH1110
CLEU26
CGLY27
CGLY28
CGLY29
CLYS43
CLEU73
CGLN118
CGLY119
CTHR120

Functional Information from PROSITE/UniProt
site_idPS00808
Number of Residues20
DetailsADP_GLC_PYROPHOSPH_1 ADP-glucose pyrophosphorylase signature 1. GGGaGTrLypLTkkrAkPAV
ChainResidueDetails
AGLY27-VAL46

site_idPS00809
Number of Residues9
DetailsADP_GLC_PYROPHOSPH_2 ADP-glucose pyrophosphorylase signature 2. WFqGTADAV
ChainResidueDetails
ATRP116-VAL124

site_idPS00810
Number of Residues11
DetailsADP_GLC_PYROPHOSPH_3 ADP-glucose pyrophosphorylase signature 3. ASMGIYVIskD
ChainResidueDetails
AALA228-ASP238

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
ALYS198
BLYS198
CLYS198
DLYS198

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
AARG33

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
BARG33

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
CARG33

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1hv9
ChainResidueDetails
DARG33

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PDB entries from 2024-06-26

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